rs233498676 SNP Detail

Summary

• ID
  rs233498676
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:79752708 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTCTATCG GGGCAAGGCT
  TTCTAGTATA CAGCAAGCAT CTAATTGGAA AGCCACTGTG CCCTTTAACA TGATTGGCTG
  GTGCTGGGAG TCCTATCATA AGCTTAGTTT CTGCTCCCCT CTGCATTGGT GTTTGTTAGG
  CGAGGGTGGG TTTGTAACCT GAGGTGCAGG TTTGTTGGGG GAATAACCTG GAGACACCGG
  Y
  CTTGTTGAGG GTGTAACCTG GAAACTCTGG TCTTGTTAGA GGCTTAGCCT AGAGACTGGA
  GCTAGGCTCA TGGTTTGGTT GAGGGAGAAC TTGGAAAGGA ATGCCAGGTA CCAGCCTGTT
  AGTCCACCTG AGTTCAAACT TAGGTCAGGT TTTCTAAAAC GGAGTCTGAA TTAAAAAAGA
  TTTGGCATGC AGACAAAGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	JF1/MsJ	LEWES/EiJ	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	RF/J	RIIIS/J	SPRET/EiJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
ss394686660	MGP_WTSI_15_79698937	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	JF1/MsJ	LEWES/EiJ	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	RF/J	RIIIS/J	SPRET/EiJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
rs233498676					SNP	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394686660	MGP_WTSI_15_79698937	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:79752708 () rs orientation: forward

Symbol	Name	Function Class
Gm62131	predicted gene, 62131	616 bp downstream
Rr304304	regulatory region 304304	1508 bp distal
Rr304305	regulatory region 304305	308 bp distal
Rr304306	regulatory region 304306	693 bp proximal
Rr314561	regulatory region 314561	908 bp distal