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rs233517146 SNP Detail
Summary
  • ID
    rs233517146
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr7:44127308 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          TTGTT CTTCTACATC TATCCTCCTC
Y
GCTGCCTCCT CCTTTTACTT TGCCT                                      

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
LG/J
SM/J
ss322198923 CHEV_7_51733254 CHEVERUD SCREENING_POP f SNP T C
SNP Consensus Information
SNP Consensus Type
LG/J
SM/J
rs233517146 SNP T C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:44127308 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Tssr2222 transcription start site region 2222 1530 bp downstream
Tssr2223 transcription start site region 2223 1351 bp downstream
Tssr2224 transcription start site region 2224 505 bp downstream
Tssr2225 transcription start site region 2225 465 bp downstream
Tssr2226 transcription start site region 2226 54 bp upstream
Tssr2227 transcription start site region 2227 1127 bp upstream
Tssr66197 transcription start site region 66197 1952 bp downstream
Tssr66198 transcription start site region 66198 1921 bp downstream
Tssr66199 transcription start site region 66199 1911 bp downstream
Tssr66200 transcription start site region 66200 1888 bp downstream
Tssr66201 transcription start site region 66201 1870 bp downstream
Tssr66202 transcription start site region 66202 1855 bp downstream
Tssr66203 transcription start site region 66203 1833 bp downstream
Tssr66204 transcription start site region 66204 1777 bp downstream
Tssr66205 transcription start site region 66205 1753 bp downstream
Tssr66206 transcription start site region 66206 1740 bp downstream
Tssr66207 transcription start site region 66207 1720 bp downstream
Tssr66208 transcription start site region 66208 1706 bp downstream
Tssr66209 transcription start site region 66209 1675 bp downstream
Tssr66210 transcription start site region 66210 1642 bp downstream
Tssr66211 transcription start site region 66211 1602 bp downstream
Tssr66212 transcription start site region 66212 1559 bp downstream
Tssr66213 transcription start site region 66213 1544 bp downstream
Tssr66214 transcription start site region 66214 1512 bp downstream
Tssr66215 transcription start site region 66215 1482 bp downstream
Tssr66216 transcription start site region 66216 1435 bp downstream
Tssr66217 transcription start site region 66217 1363 bp downstream
Tssr66218 transcription start site region 66218 1309 bp downstream
Tssr66219 transcription start site region 66219 1267 bp downstream
Tssr66220 transcription start site region 66220 1233 bp downstream
Tssr66221 transcription start site region 66221 1214 bp downstream
Tssr66222 transcription start site region 66222 1161 bp downstream
Tssr66223 transcription start site region 66223 1094 bp downstream
Tssr66224 transcription start site region 66224 1071 bp downstream
Tssr66225 transcription start site region 66225 1051 bp downstream
Tssr66226 transcription start site region 66226 1038 bp downstream
Tssr66227 transcription start site region 66227 997 bp downstream
Tssr66228 transcription start site region 66228 994 bp downstream
Tssr66229 transcription start site region 66229 981 bp downstream
Tssr66230 transcription start site region 66230 961 bp downstream
Tssr66231 transcription start site region 66231 926 bp downstream
Tssr66232 transcription start site region 66232 914 bp downstream
Tssr66233 transcription start site region 66233 892 bp downstream
Tssr66234 transcription start site region 66234 862 bp downstream
Tssr66235 transcription start site region 66235 842 bp downstream
Tssr66236 transcription start site region 66236 815 bp downstream
Tssr66237 transcription start site region 66237 794 bp downstream
Tssr66238 transcription start site region 66238 775 bp downstream
Tssr66239 transcription start site region 66239 724 bp downstream
Tssr66240 transcription start site region 66240 643 bp downstream
Tssr66241 transcription start site region 66241 631 bp downstream
Tssr66242 transcription start site region 66242 551 bp downstream
Tssr66243 transcription start site region 66243 537 bp downstream
Tssr66244 transcription start site region 66244 486 bp downstream
Tssr66245 transcription start site region 66245 424 bp downstream
Tssr66246 transcription start site region 66246 396 bp downstream
Tssr66247 transcription start site region 66247 349 bp downstream
Tssr66248 transcription start site region 66248 308 bp downstream
Tssr66249 transcription start site region 66249 285 bp downstream
Tssr66250 transcription start site region 66250 266 bp downstream
Tssr66251 transcription start site region 66251 241 bp downstream
Tssr66252 transcription start site region 66252 210 bp downstream
Tssr66253 transcription start site region 66253 182 bp downstream
Tssr66254 transcription start site region 66254 134 bp downstream
Tssr66255 transcription start site region 66255 107 bp downstream
Tssr66256 transcription start site region 66256 58 bp downstream
Tssr66257 transcription start site region 66257 47 bp downstream
Tssr66258 transcription start site region 66258 4 bp downstream
Tssr66259 transcription start site region 66259 5 bp upstream
Tssr66260 transcription start site region 66260 121 bp upstream
Tssr66261 transcription start site region 66261 147 bp upstream
Tssr66262 transcription start site region 66262 164 bp upstream
Tssr66263 transcription start site region 66263 170 bp upstream
Tssr66264 transcription start site region 66264 180 bp upstream
Tssr66265 transcription start site region 66265 209 bp upstream
Tssr66266 transcription start site region 66266 252 bp upstream
Tssr66267 transcription start site region 66267 280 bp upstream
Tssr66268 transcription start site region 66268 309 bp upstream
Tssr66269 transcription start site region 66269 329 bp upstream
Tssr66270 transcription start site region 66270 380 bp upstream
Tssr66271 transcription start site region 66271 398 bp upstream
Tssr66272 transcription start site region 66272 464 bp upstream
Tssr66273 transcription start site region 66273 476 bp upstream
Tssr66274 transcription start site region 66274 491 bp upstream
Tssr66275 transcription start site region 66275 499 bp upstream
Tssr66276 transcription start site region 66276 528 bp upstream
Tssr66277 transcription start site region 66277 536 bp upstream
Tssr66278 transcription start site region 66278 568 bp upstream
Tssr66279 transcription start site region 66279 615 bp upstream
Tssr66280 transcription start site region 66280 654 bp upstream
Tssr66281 transcription start site region 66281 685 bp upstream
Tssr66282 transcription start site region 66282 711 bp upstream
Tssr66283 transcription start site region 66283 725 bp upstream
Tssr66284 transcription start site region 66284 742 bp upstream
Tssr66285 transcription start site region 66285 757 bp upstream
Tssr66286 transcription start site region 66286 794 bp upstream
Tssr66287 transcription start site region 66287 812 bp upstream
Tssr66288 transcription start site region 66288 848 bp upstream
Tssr66289 transcription start site region 66289 896 bp upstream
Tssr66290 transcription start site region 66290 957 bp upstream
Tssr66291 transcription start site region 66291 986 bp upstream
Tssr66292 transcription start site region 66292 1024 bp upstream
Tssr66293 transcription start site region 66293 1042 bp upstream
Tssr66294 transcription start site region 66294 1063 bp upstream
Tssr66295 transcription start site region 66295 1348 bp upstream
Tssr66296 transcription start site region 66296 1481 bp upstream
Tssr66297 transcription start site region 66297 1524 bp upstream
Tssr66298 transcription start site region 66298 1549 bp upstream
Tssr66299 transcription start site region 66299 1618 bp upstream
Tssr66300 transcription start site region 66300 1625 bp upstream
Tssr66301 transcription start site region 66301 1649 bp upstream
Tssr66302 transcription start site region 66302 1663 bp upstream
Tssr66303 transcription start site region 66303 1704 bp upstream
Tssr66304 transcription start site region 66304 1712 bp upstream
Tssr66305 transcription start site region 66305 1722 bp upstream
Tssr66306 transcription start site region 66306 1756 bp upstream
Tssr66307 transcription start site region 66307 1813 bp upstream
Tssr66308 transcription start site region 66308 1866 bp upstream
Tssr66309 transcription start site region 66309 1887 bp upstream
Tssr66310 transcription start site region 66310 1925 bp upstream
Tssr72199 transcription start site region 72199 401 bp upstream
Tssr72200 transcription start site region 72200 545 bp downstream
Tssr72201 transcription start site region 72201 1046 bp downstream
Tssr72202 transcription start site region 72202 1909 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory