rs233517320 SNP Detail

Summary

• ID
  rs233517320
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:116949939 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTAA GATGAACAAT CCTGCAGACG
  Y
  GGCTGGAAGT TATATAAAGA AACCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355378999	MGP_WTSI_2_116945194	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	T	C	T	T	C	C	C	C	C	C	T	T	T	C	T	C	C	C	C	T	C	T	C	C	C	T	T	C	C	C	C	C	T	C	C	C	C	T	C	C	T	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs233517320					SNP	C	C	C	C	C	C	C	C	T	C	T	T	C	C	C	C	C	C	T	T	T	C	T	C	C	C	C	T	C	T	C	C	C	T	T	C	C	C	C	C	T	C	C	C	C	T	C	C	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355378999	MGP_WTSI_2_116945194	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:116949939 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12072	CpG island 12072	551 bp proximal
Gm74661	predicted gene, 74661	1019 bp upstream
Rr367269	regulatory region 367269	1158 bp upstream
Rr373730	regulatory region 373730	within coordinates
Spred1	sprouty protein with EVH-1 domain 1, related sequence	1916 bp upstream
Tssr19479	transcription start site region 19479	976 bp upstream
Tssr19480	transcription start site region 19480	1270 bp upstream
Tssr19481	transcription start site region 19481	1299 bp upstream
Tssr19482	transcription start site region 19482	1369 bp upstream
Tssr19483	transcription start site region 19483	1402 bp upstream
Tssr19484	transcription start site region 19484	1441 bp upstream
Tssr19485	transcription start site region 19485	1463 bp upstream
Tssr19486	transcription start site region 19486	1535 bp upstream
Tssr19487	transcription start site region 19487	1582 bp upstream
Tssr19488	transcription start site region 19488	1593 bp upstream
Tssr19489	transcription start site region 19489	1707 bp upstream
Tssr19490	transcription start site region 19490	1930 bp upstream