rs233518836 SNP Detail

Summary

• ID
  rs233518836
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:149981332 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             GGAAATCCCA TCTGTTCTCC TCAATACTGG AAGCCGAGCA CCTTTGGAGG
  Y
  GAAGTGGGTT TTAAGATCAT CAATACTGCC TCAATTCAGT CTCTCATCTG           
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320045546	CHEV_1_151952711	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs233518836					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149981332 () rs orientation: forward

Symbol	Name	Function Class
Ptgs2	prostaglandin-endoperoxide synthase 2	within coordinates
Rr12935	regulatory region 12935	932 bp distal
Rr24983	regulatory region 24983	1036 bp distal
Tssr9248	transcription start site region 9248	1893 bp downstream
Tssr9249	transcription start site region 9249	1879 bp downstream
Tssr9250	transcription start site region 9250	1678 bp downstream
Tssr9251	transcription start site region 9251	1626 bp downstream
Tssr9252	transcription start site region 9252	1591 bp downstream
Tssr9253	transcription start site region 9253	1566 bp downstream
Tssr9254	transcription start site region 9254	1550 bp downstream
Tssr9255	transcription start site region 9255	1499 bp downstream
Tssr9256	transcription start site region 9256	1294 bp downstream
Tssr9257	transcription start site region 9257	1260 bp downstream
Tssr9258	transcription start site region 9258	1244 bp downstream
Tssr9259	transcription start site region 9259	1187 bp downstream
Tssr9260	transcription start site region 9260	1135 bp downstream
Tssr9261	transcription start site region 9261	1116 bp downstream
Tssr9262	transcription start site region 9262	1095 bp downstream
Tssr9263	transcription start site region 9263	1083 bp downstream
Tssr9264	transcription start site region 9264	1034 bp downstream
Tssr9265	transcription start site region 9265	1007 bp downstream
Tssr9266	transcription start site region 9266	918 bp downstream
Tssr9267	transcription start site region 9267	583 bp downstream
Tssr9268	transcription start site region 9268	513 bp downstream
Tssr9269	transcription start site region 9269	176 bp downstream
Tssr9270	transcription start site region 9270	145 bp downstream
Tssr9271	transcription start site region 9271	122 bp downstream
Tssr9272	transcription start site region 9272	91 bp downstream
Tssr9273	transcription start site region 9273	47 bp downstream
Tssr9274	transcription start site region 9274	27 bp downstream
Tssr9275	transcription start site region 9275	within coordinates
Tssr9276	transcription start site region 9276	9 bp upstream
Tssr9277	transcription start site region 9277	59 bp upstream
Tssr9278	transcription start site region 9278	80 bp upstream
Tssr9279	transcription start site region 9279	101 bp upstream
Tssr9280	transcription start site region 9280	118 bp upstream
Tssr9281	transcription start site region 9281	224 bp upstream
Tssr9282	transcription start site region 9282	259 bp upstream
Tssr9283	transcription start site region 9283	273 bp upstream
Tssr9284	transcription start site region 9284	288 bp upstream
Tssr9285	transcription start site region 9285	298 bp upstream
Tssr9286	transcription start site region 9286	382 bp upstream
Tssr9287	transcription start site region 9287	895 bp upstream
Tssr9288	transcription start site region 9288	1011 bp upstream
Tssr9289	transcription start site region 9289	1028 bp upstream
Tssr9290	transcription start site region 9290	1184 bp upstream
Tssr9291	transcription start site region 9291	1230 bp upstream
Tssr9292	transcription start site region 9292	1349 bp upstream
Tssr9293	transcription start site region 9293	1378 bp upstream
Tssr9294	transcription start site region 9294	1398 bp upstream
Tssr9295	transcription start site region 9295	1414 bp upstream
Tssr9296	transcription start site region 9296	1436 bp upstream
Tssr9297	transcription start site region 9297	1445 bp upstream
Tssr9298	transcription start site region 9298	1471 bp upstream
Tssr9299	transcription start site region 9299	1493 bp upstream
Tssr9300	transcription start site region 9300	1510 bp upstream
Tssr9301	transcription start site region 9301	1644 bp upstream
Tssr9302	transcription start site region 9302	1674 bp upstream
Tssr9303	transcription start site region 9303	1736 bp upstream
Tssr9304	transcription start site region 9304	1760 bp upstream
Tssr9305	transcription start site region 9305	1778 bp upstream
Tssr9306	transcription start site region 9306	1790 bp upstream
Tssr9307	transcription start site region 9307	1794 bp upstream
Tssr9308	transcription start site region 9308	1827 bp upstream
Tssr9309	transcription start site region 9309	1841 bp upstream
Tssr9310	transcription start site region 9310	1872 bp upstream
Tssr9311	transcription start site region 9311	1884 bp upstream
Tssr9312	transcription start site region 9312	1909 bp upstream
Tssr9313	transcription start site region 9313	1929 bp upstream
Tssr9314	transcription start site region 9314	1940 bp upstream