rs233525690 SNP Detail

Summary

• ID
  rs233525690
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:22713506 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAGAGCAA AGTCTAAAAC
  CCGCTGTGGG ATAGATGGTG CCTTCCCCGA GGTTGATTTT CACAACACTT GGGCTTTTCT
  TCTTGAAGCC CTCGGGAGAG CAGATTATGA TGTTTCAATA ACACCCGTGA AGGTTGCCTT
  GGGCAGGTTA CCTCCCACAA CCCTGCCAAG ACGCTCCCTG AATGAGCAGC CAGAGTATAT
  R
  TACTGCTTCA GAATGCCGGC ATCTGATTTC TTTCCCAGGC GGTGGAGGGA GACTGTGACT
  TCCACATCCT GAAACAAGAC GGCCAGTTCA GGGTGATGCA CACCCAGTGT CATTCCACCC
  CAGGTCAGAA AACACTGCCT CTTGTTTTTA TCTCGTAGAA TGAGAAAGGA ATCAGAATAG
  TTTTGAACTC AAATAGGTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395628355	MGP_WTSI_16_22894829	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs233525690					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395628355	MGP_WTSI_16_22894829	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:22713506 () rs orientation: forward

Symbol	Name	Function Class
Ahsg	alpha-2-HS-glycoprotein	within coordinates
Gm30505	predicted gene, 30505	370 bp upstream
Tssr4818	transcription start site region 4818	1932 bp downstream
Tssr4819	transcription start site region 4819	575 bp upstream
Tssr4820	transcription start site region 4820	1191 bp upstream
Tssr137559	transcription start site region 137559	1979 bp downstream
Tssr137560	transcription start site region 137560	1936 bp downstream
Tssr137561	transcription start site region 137561	1911 bp downstream
Tssr137562	transcription start site region 137562	1585 bp downstream
Tssr137563	transcription start site region 137563	515 bp downstream
Tssr137564	transcription start site region 137564	485 bp downstream
Tssr137565	transcription start site region 137565	348 bp downstream
Tssr137566	transcription start site region 137566	339 bp downstream
Tssr137567	transcription start site region 137567	21 bp upstream
Tssr137568	transcription start site region 137568	40 bp upstream
Tssr137569	transcription start site region 137569	71 bp upstream
Tssr137570	transcription start site region 137570	86 bp upstream
Tssr137571	transcription start site region 137571	420 bp upstream
Tssr137572	transcription start site region 137572	443 bp upstream
Tssr137573	transcription start site region 137573	537 bp upstream
Tssr137574	transcription start site region 137574	558 bp upstream
Tssr137575	transcription start site region 137575	564 bp upstream
Tssr137576	transcription start site region 137576	1244 bp upstream
Tssr137577	transcription start site region 137577	1666 bp upstream
Tssr137578	transcription start site region 137578	1737 bp upstream
Tssr140504	transcription start site region 140504	364 bp upstream
Tssr140505	transcription start site region 140505	315 bp upstream
Tssr140506	transcription start site region 140506	74 bp downstream
Tssr140507	transcription start site region 140507	457 bp downstream
Tssr140508	transcription start site region 140508	501 bp downstream
Tssr140509	transcription start site region 140509	520 bp downstream
Tssr140510	transcription start site region 140510	535 bp downstream
Tssr140511	transcription start site region 140511	578 bp downstream
Tssr140512	transcription start site region 140512	1801 bp downstream
Tssr140513	transcription start site region 140513	1812 bp downstream
Tssr140514	transcription start site region 140514	1845 bp downstream