rs233530039 SNP Detail

Summary

• ID
  rs233530039
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:14930173 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCTG GGCTCCATTT CTCAACAACC
  R
  TCCTTGTCGA CAGCTGGAAT CCACA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321047004	CHEV_4_14857320	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs233530039					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:14930173 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14053	CpG island 14053	within coordinates
Gm11837	predicted gene 11837	Intron
Gm68732	predicted gene, 68732	within coordinates
Rr589248	regulatory region 589248	312 bp distal
Rr589249	regulatory region 589249	within coordinates
Rr589250	regulatory region 589250	277 bp proximal
Rr589251	regulatory region 589251	514 bp proximal
Tssr36545	transcription start site region 36545	302 bp downstream
Tssr36546	transcription start site region 36546	446 bp upstream
Tssr36547	transcription start site region 36547	536 bp upstream