rs233535573 SNP Detail

Summary

• ID
  rs233535573
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:143117366 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTGATATA AATATTTTAT
  TATCTATTGT ATTGCCTTTG TTACTTTGTC AAAAATAAAA TGACTTCTTT ATATCTGTCT
  GTTGTTTGTT TTCTTAGTGT GTACTTCTCT TTTTCTTGTC TTTCTCATCT TTGTTTCTAG
  GTTTTGCTTA TATTCTGATT ATCTTCCTGG CCCTTTCCCT TGGAAGTATA TTAATAGTAT
  Y
  TGTTGAAGTT TTATATTCAT GTTTAATGTT CAGTAGATGT AAACAATTTG TATTTTGTCT
  TTATTTGTAG AATATGACAA AATCGACTTA ACTGTAAGCT TTAATTTGTT GTTCTTAGTG
  AATTGGTCGT CCCAGAACTT TTGCAAAAAA AAAATTCTAG TTTCTTTAGA AAAAAAAATA
  TGAAAACTGA ATGGTAAGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss404807825	MGP_WTSI_X_140768913	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs233535573					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss404807825	MGP_WTSI_X_140768913	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:143117366 () rs orientation: forward

Symbol	Name	Function Class
Alg13	asparagine-linked glycosylation 13	within coordinates
Rr395738	regulatory region 395738	617 bp upstream
Tssr162278	transcription start site region 162278	1417 bp upstream
Tssr162279	transcription start site region 162279	1533 bp upstream
Tssr162280	transcription start site region 162280	1566 bp upstream
Tssr162281	transcription start site region 162281	1646 bp upstream
Tssr162282	transcription start site region 162282	1677 bp upstream
Tssr162283	transcription start site region 162283	1695 bp upstream
Tssr162284	transcription start site region 162284	1709 bp upstream
Tssr162285	transcription start site region 162285	1725 bp upstream
Tssr162286	transcription start site region 162286	1754 bp upstream
Tssr162287	transcription start site region 162287	1777 bp upstream
Tssr162288	transcription start site region 162288	1794 bp upstream
Tssr162289	transcription start site region 162289	1818 bp upstream
Tssr162290	transcription start site region 162290	1842 bp upstream