rs233538978 SNP Detail

Summary

• ID
  rs233538978
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:72810383 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGCGGCTGT AACCCTCCTC
  CTCCTCGTTC CCTCCTCCTC CTCCCCGCGC TGCCCCTGCC CCCTCTCCTC TCCTCTCCTC
  TCCTCCCCTT TCCCTCCGCG GCGCTCGCTC CTCTCGCACC GTCAGTCACT CGCACACGCC
  CGCCCGCCGC CGCCGCCCGC GCCCGCACAC AGGGGGGATG CGCTCCCGGC GGACCGGGCC
  K
  CCCGCCCGGA GCCCGGCGGG CACTCGGCGC TGGGGCTGGA AGGGCTGGAC AGCTGGCTGG
  CGGAGATGGG AGTGCGGCTT TCTGCCTCCG CCGACACTCG GTCGCACGCT CCCGGAGGCC
  GGGAGCCGGC GGTGGCGGCC CCGGGCTGGC TGTGGGCGGC AGTGGCAGCG GCGGAGGCAG
  CGAGGGTTGC TCTCTCTCGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss354450960	MGP_WTSI_2_72818096	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs233538978					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354450960	MGP_WTSI_2_72818096	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72810383 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11763	CpG island 11763	within coordinates
D130067C23Rik	RIKEN cDNA D130067C23 gene	within coordinates
Rr373352	regulatory region 373352	within coordinates
Rr559063	regulatory region 559063	613 bp distal
Rr559064	regulatory region 559064	377 bp proximal
Sp3	trans-acting transcription factor 3	within coordinates
Sp3os	trans-acting transcription factor 3, opposite strand	within coordinates
Tssr18359	transcription start site region 18359	905 bp downstream
Tssr18360	transcription start site region 18360	882 bp downstream
Tssr18361	transcription start site region 18361	538 bp downstream
Tssr18362	transcription start site region 18362	519 bp downstream
Tssr18363	transcription start site region 18363	63 bp downstream
Tssr24523	transcription start site region 24523	973 bp upstream
Tssr24524	transcription start site region 24524	697 bp upstream
Tssr24525	transcription start site region 24525	371 bp upstream
Tssr24526	transcription start site region 24526	363 bp downstream
Tssr24527	transcription start site region 24527	856 bp downstream
Tssr24528	transcription start site region 24528	882 bp downstream