rs233540452 SNP Detail

Summary

• ID
  rs233540452
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:107972038 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAGCGGGA AACAAAAATT
  CAGTCGAAGA CTAGGCAAGT GGGAGGCAGA ATCAGGGAGT CGAGTCCTGG GATTTTTAGA
  GAGGGGAGGC TCCGAGGAGT GAGGGCGGAC GTATAGCAGC AGAATACAGA GCCGGTGTTC
  AGAGACAGGG CAGGTCTGGG AGGAGTGAAG GAAGTAGGAT TGGACTCCAG CCGACTGTGA
  K
  CTGAAAGCTG CGGGATCAGA GAGAAAGCCC TGAGCGTTCG AAGGGTGGGG CTTCGGAGGA
  ACACTAATGA TCCTTAAGGA TGAGGGGGCG GGGGCGGGGG CGGGGACGGG TGGGAACCGA
  ATACAGAGAC TAGCGGGTCT GTGAAAGCGG AATGTTGCGG GGCGCCTCAG TCGCAGGGAT
  CTCTTTCAGC GCTCTCCCCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378860067	MGP_WTSI_9_107997170	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs233540452					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378860067	MGP_WTSI_9_107997170	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:107972038 () rs orientation: forward

Symbol	Name	Function Class
Apeh	acylpeptide hydrolase	302 bp upstream
Bsn	bassoon	1183 bp downstream
Cpgi22322	CpG island 22322	within coordinates
Gm57046	predicted gene, 57046	within coordinates
Rr401675	regulatory region 401675	117 bp downstream
Rr686707	regulatory region 686707	543 bp distal
Rr686708	regulatory region 686708	246 bp distal
Rr686709	regulatory region 686709	within coordinates
Rr686710	regulatory region 686710	917 bp proximal
Rr686711	regulatory region 686711	1441 bp proximal
Rr686712	regulatory region 686712	1663 bp proximal
Tssr87065	transcription start site region 87065	143 bp downstream
Tssr87066	transcription start site region 87066	353 bp upstream
Tssr87067	transcription start site region 87067	398 bp upstream
Tssr91491	transcription start site region 91491	352 bp upstream
Tssr91492	transcription start site region 91492	297 bp upstream