rs233542596 SNP Detail

Summary

• ID
  rs233542596
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:24022492 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAAGGTTT AAAATGTCCC
  ATCACCTGAT AAATGTGTAA TGATACATGG AAGATTATTC AACCATAAAG AAAAATCAAA
  CTACAAAATT ATCAGTTCGG TGCATTTCTC AGCCCTCATC AGGGAAGCTT CTTTTTATAG
  TATAAGGTGA TTAATACAAA GACCCACGGC TTGTCAAAAT CTAGGGAGTA AGAGACTGTG
  R
  TATGATCAGC TTTAAAAGGG CATCTGTGTC ACATTCTTGA TCATAAGGCT CAGGAAGCAT
  TGTAGAAGAG GCATCTTAAG CACCAGAGGT AGTGGACATC TACTGCAAAA CCTTCTTTGC
  CAGACAAGAC AGCGCTGTTG TACACGTGAG CTCACAGCAG CTGTGGCTGT AAACACAAGA
  CCTGAGCAAG ATCCAGCCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324292292	CHEV_13_23930378	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs233542596					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:24022492 () rs orientation: forward

Symbol	Name	Function Class
Gm56568	predicted gene, 56568	110 bp downstream
Rr475959	regulatory region 475959	1595 bp distal
Rr475960	regulatory region 475960	929 bp proximal
Rr475961	regulatory region 475961	1012 bp proximal
Slc17a3	solute carrier family 17 (sodium phosphate), member 3	Intron
Tssr4011	transcription start site region 4011	1116 bp upstream
Tssr4012	transcription start site region 4012	1214 bp upstream
Tssr118873	transcription start site region 118873	1599 bp downstream
Tssr118874	transcription start site region 118874	1548 bp downstream
Tssr118875	transcription start site region 118875	892 bp upstream
Tssr118876	transcription start site region 118876	936 bp upstream
Tssr118877	transcription start site region 118877	1068 bp upstream
Tssr118878	transcription start site region 118878	1089 bp upstream