rs233548086 SNP Detail

Summary

• ID
  rs233548086
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:107440678 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTAACATC AAATATAATT
  AGCCCCAGGG CTATCCACAA CACTCTAACC TCTGTCTATC TATCACCTAT CCAACATCTA
  CCAATCTATC AACAAGCTAC TATCTATCCT TCTATCTATT ATCTATCTAT CTGAGAGAAA
  GAGTATAATT ACTGTTATTA AACTTCTGCA AATGCCATTC ACTCCTCCTT AACCTTCCTA
  R
  TTGATTTAGA AAACAATAAT TTGTACTTAC AATGTGTCAT ATCTCATACT AAGGAGGCTA
  ACTTTCATTA GCTCATTCAT TCCTTACAAC AACCCAGTGA AGAGAACTTA GTTTTCATTA
  AAAATTAGTA ACCTGAGGCC CCATATAAGT AAGTAGCTAG CTCACGGTGA TACATTTTAG
  AAGATAAGTG ACTATTATTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322381911	CHEV_7_114984985	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs233548086					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:107440678 () rs orientation: forward

Symbol	Name	Function Class
Gm5002	predicted gene 5002	738 bp upstream
Rr152607	regulatory region 152607	323 bp proximal
Rr381269	regulatory region 381269	108 bp downstream