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rs233549802 SNP Detail
Summary
  • ID
    rs233549802
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr16:22713765 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CTTCCACATC CTGAAACAAG
ACGGCCAGTT CAGGGTGATG CACACCCAGT GTCATTCCAC CCCAGGTCAG AAAACACTGC
CTCTTGTTTT TATCTCGTAG AATGAGAAAG GAATCAGAAT AGTTTTGAAC TCAAATAGGT
CTCACTTCCT CTGTGAGGAT TCTGGGTCCT GGGGATTCTA ATGCCATCTT TTAAAGAAGC
Y
CGTTCTTGTG GGCGAACATT GTCCCCGTGG CTGTGACTTG GTGACCTTCA TACAGCTGCT
TGAAGGCTTA GAGAAGAAGT CATGCTACAT TGGAGCACTA GGAGCCCTTT CTAAATAAGC
AAGCTGTTGT GAGTACACTG GAGAGCTGCA GTTGAGACCC TGCTATCTTC CCGCCCAGAC
TCTGCAGAGG ACGTTCGTAA                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss395628358 MGP_WTSI_16_22895088 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs233549802 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss395628358 MGP_WTSI_16_22895088 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr16:22713765 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Ahsg alpha-2-HS-glycoprotein within coordinates
Gm30505 predicted gene, 30505 629 bp upstream
Rr513336 regulatory region 513336 685 bp distal
Rr513337 regulatory region 513337 219 bp distal
Tssr4819 transcription start site region 4819 316 bp upstream
Tssr4820 transcription start site region 4820 932 bp upstream
Tssr137562 transcription start site region 137562 1844 bp downstream
Tssr137563 transcription start site region 137563 774 bp downstream
Tssr137564 transcription start site region 137564 744 bp downstream
Tssr137565 transcription start site region 137565 607 bp downstream
Tssr137566 transcription start site region 137566 598 bp downstream
Tssr137567 transcription start site region 137567 230 bp downstream
Tssr137568 transcription start site region 137568 199 bp downstream
Tssr137569 transcription start site region 137569 178 bp downstream
Tssr137570 transcription start site region 137570 161 bp downstream
Tssr137571 transcription start site region 137571 161 bp upstream
Tssr137572 transcription start site region 137572 184 bp upstream
Tssr137573 transcription start site region 137573 278 bp upstream
Tssr137574 transcription start site region 137574 299 bp upstream
Tssr137575 transcription start site region 137575 305 bp upstream
Tssr137576 transcription start site region 137576 985 bp upstream
Tssr137577 transcription start site region 137577 1407 bp upstream
Tssr137578 transcription start site region 137578 1478 bp upstream
Tssr140504 transcription start site region 140504 623 bp upstream
Tssr140505 transcription start site region 140505 574 bp upstream
Tssr140506 transcription start site region 140506 154 bp upstream
Tssr140507 transcription start site region 140507 198 bp downstream
Tssr140508 transcription start site region 140508 242 bp downstream
Tssr140509 transcription start site region 140509 261 bp downstream
Tssr140510 transcription start site region 140510 276 bp downstream
Tssr140511 transcription start site region 140511 319 bp downstream
Tssr140512 transcription start site region 140512 1542 bp downstream
Tssr140513 transcription start site region 140513 1553 bp downstream
Tssr140514 transcription start site region 140514 1586 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory