rs233550056 SNP Detail

Summary

• ID
  rs233550056
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:79595664 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    cgaagatcg cgggttcgaa ccccgtccgt
  gcctGCGTTT GGAAGAGATA TTTTCTTGTT TTCAGCTCCC TTTTGTTTGT TTGTTTTTGT
  TTTTGTTCAG GAGTTCAGCC CCTCCTCTAC CGGTTCGTGG CCAGAGCACT GTAACTCTTT
  T
  CAGAGGCCCC GCACAGCTGC TGAACTCCCT GCATCCTCTA CCCTTCAACT CCGGTCTGGA
  TCCCGCGACG AAGGCAAGCC TTCTCTGTGA ACTTTCCTTC CCTACAACGT GCGTGCGTGT
  CGCCGCTTTC CCCTGCTCAG CCAACTGTCC                                 
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323760571	CHEV_11_79518340	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs233550056					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:79595664 () rs orientation: forward

Symbol	Name	Function Class
B230207N12Rik	RIKEN cDNA B230207N12 gene	388 bp upstream
Cpgi3370	CpG island 3370	within coordinates
Gm11205	predicted gene 11205	within coordinates
Gm74173	predicted gene, 74173	286 bp upstream
n-TTcgt3	nuclear encoded tRNA threonine 3 (anticodon CGT)	117 bp downstream
Rr402778	regulatory region 402778	118 bp downstream
Tssr109524	transcription start site region 109524	321 bp upstream