rs233551808 SNP Detail

Summary

• ID
  rs233551808
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128656903 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTTCCGTA CCTTCAGTTG
  TTAGTGTGTA TACTCACACA AGTGGGGTTT TTACTCAGAT CTTTACATTT CAACTAAATA
  TAAAGCAGTA AGTTTAGACT GTGAGACCTA TTTGAAGGAT CGGAGGAATC GGGAGTATTT
  TAATTTACTT TCTTGAGGAA GTTAGTGAAT TATAAAGAGG TCACACATAC CCAGAGTTCC
  M
  CAAGAAAGCT ATTCAGTTAA TCAAGGGACC AATAAAGAAG GCACTGAGAG TAAAGCTACC
  TCTAGTTCCC ATCCTTTTTT CCTGGGGCTT GTCCATCCTG TCTCTCACCC GCTTGGCATT
  GTCAGCAGCC AAGCAATTTC ATCCCTTCAC TGAACGTGGG GCGCTGCAAA AACTTACCCA
  ATTTTTAAAT TAGTCTAGGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382211297	MGP_WTSI_10_128258090	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs233551808					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382211297	MGP_WTSI_10_128258090	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128656903 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2421	CpG island 2421	420 bp proximal
Dnajc14	DnaJ heat shock protein family (Hsp40) member C14	1586 bp downstream
Ormdl2	ORM1-like 2 (S. cerevisiae)	within coordinates
Rr402366	regulatory region 402366	487 bp upstream
Rr441331	regulatory region 441331	within coordinates
Rr441332	regulatory region 441332	547 bp proximal
Rr441333	regulatory region 441333	874 bp proximal
Rr441334	regulatory region 441334	891 bp proximal
Rr441335	regulatory region 441335	1209 bp proximal
Sarnp	SAP domain containing ribonucleoprotein	730 bp upstream
Tssr96457	transcription start site region 96457	1360 bp downstream
Tssr96458	transcription start site region 96458	692 bp upstream
Tssr96459	transcription start site region 96459	711 bp upstream
Tssr96460	transcription start site region 96460	750 bp upstream
Tssr96461	transcription start site region 96461	853 bp upstream
Tssr99967	transcription start site region 99967	542 bp downstream