rs233576538 SNP Detail

Summary

• ID
  rs233576538
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:111577336 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCCCACTGC CTCTTGCTCC
  GTAGTGTCCG GCCTTGGCGT GGCTCTTCCG GCCCCGCCCC TCCAGGCTGC CATGACAACG
  AGTCCGCGCC CCGCGCTCAG CTGCTGTTCG GGCGGGACCC AGGCTGGACC GCGGGCCCCG
  GCCTGGGGGC CACAGCTGCC ACCTCCGCCG CCACCTCATC TCCTCCCTGT CCCTCGTCCC
  R
  CCCCGCGTCT TCCCGCCGTA GTCGGGCCGG AGGCCGGGGT CCCTCCCCGC CGCCCTACCC
  TGCGCGGATG CCGAAGGTGA AGGCGCTGCA ATGCGCCCTG GCGCTGGAGA TCCGCTCTGT
  GAGTACCGGC CCTGTCCCGC CTCAGCCTCC AAGTCCGCTG CCCGCCCCCG GCCCTGGGGG
  ACTCCTGGAA ATCTCCAGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362843361	MGP_WTSI_4_111392744	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs233576538					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362843361	MGP_WTSI_4_111392744	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:111577336 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14590	CpG island 14590	within coordinates
Gm33192	predicted gene, 33192	within coordinates
Rr597500	regulatory region 597500	within coordinates
Rr597501	regulatory region 597501	77 bp proximal
Rr597502	regulatory region 597502	1148 bp proximal
Spata6	spermatogenesis associated 6	within coordinates
Tssr38384	transcription start site region 38384	92 bp downstream
Tssr38385	transcription start site region 38385	66 bp downstream
Tssr38386	transcription start site region 38386	44 bp downstream
Tssr38387	transcription start site region 38387	34 bp upstream
Tssr38388	transcription start site region 38388	48 bp upstream