rs233580502 SNP Detail

Summary

• ID
  rs233580502
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:94393034 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAGGCCCA GGCAGCCATC
  AACACCCTTC ACAGCAGCCG GACCCTACCG GTGAGCCCCA GTCCCCTCCT TCCTTGTCTC
  TCTCTCCCAC TGGCACACTT GCCAGGCCCT GGCACAGAGC ACACTTCCAT TCAGGATAGG
  ACTTGTAATG AACTTTCCCA AAAGAATCAA CGAATCAAAT ACCACACTCC CATAGCTGCT
  S
  CTCTTCTCTA GTCCAATTCC CTTCCGCTCC TCTCCAGCCT CCCCTCTTAG CTCCTATCGC
  TTCTCTACCC TCCCGACCCC ACCTCATCTC TTGGGGTGTC GGGACCCTGG TTTAGAGGCC
  CCACCTCTGC ACAGCACATG TTGATACCTG CTGTCCCTAA ATGTTAGTGT TCGTTCAGTT
  GCGTATGAGC TGGAATCCCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358885749	MGP_WTSI_3_94289649	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs233580502					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358885749	MGP_WTSI_3_94289649	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:94393034 () rs orientation: forward

Symbol	Name	Function Class
Celf3	CUGBP, Elav-like family member 3	within coordinates
Cpgi13484	CpG island 13484	1361 bp distal
D3Umi4	DNA segment, Chr 3, University of Michigan 4	204 bp distal
Gm65215	predicted gene, 65215	1508 bp upstream
Gm65218	predicted gene, 65218	755 bp upstream
Rr580639	regulatory region 580639	1519 bp distal
Rr580640	regulatory region 580640	1018 bp distal
Rr580641	regulatory region 580641	265 bp distal
Tssr30454	transcription start site region 30454	1392 bp downstream
Tssr30455	transcription start site region 30455	1376 bp downstream
Tssr30456	transcription start site region 30456	1319 bp downstream
Tssr30457	transcription start site region 30457	577 bp upstream
Tssr30458	transcription start site region 30458	605 bp upstream
Tssr30459	transcription start site region 30459	1963 bp upstream
Tssr34391	transcription start site region 34391	1499 bp upstream