rs233590224 SNP Detail

Summary

• ID
  rs233590224
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:105909378 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACCTGCTT GTGAATACCG
  CTTTCTTTGC TTTACTGTTT CTGGTTTCCA TAGTTTTCCT AATTATGTAA ATCGTGTGGC
  ACATGGGAGT AGTTTTCCAC TCAATACCAG TTCTGGCACT TCAGTATACA TTGAAGTCTC
  ATTTCCCCCT CCCCCAAATT GTATATATAT ATATATATAT ATATATATTT AAATGTTATA
  M
  AGATTACAAA GTCTGAAAAG TCATTTTTCA GAAAAATCTA GTAAGTGAGC TTCTGAGGTT
  GGGCTGAACC TGAAAGTTTT TTTGTGTTTG ATAGAGAGGA ATAAGACTGA TGAATTTCAT
  GAAAATTTCT CAGGTTTAAA GTTGAGTTTA ACTCCAGGGT GTAAATCTTC TATGATTACC
  ACCTGCTTCC TAATTTATTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320448471	CHEV_2_105919190	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs233590224					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:105909378 () rs orientation: forward

Symbol	Name	Function Class
Dcdc5	doublecortin domain containing 5	within coordinates
Gm74997	predicted gene, 74997	within coordinates
Gm75005	predicted gene, 75005	within coordinates
Tssr19274	transcription start site region 19274	1892 bp upstream
Tssr19275	transcription start site region 19275	1960 bp upstream
Tssr19276	transcription start site region 19276	1994 bp upstream