rs233590282 SNP Detail

Summary

• ID
  rs233590282
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:10506288 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGAAGAAA GATGAAGATC
  TTGTAAAGGT TGTTGGAACT GTTTGAGTAA TTTTTTTTCA GATTATTGAG TGGAACATAA
  CAGGATATAC ATATATACAA ACATATACAT ATATACATAT GTATATATCG CATATTTTCT
  GGTATTGATA AATGGCTAGA TTTTACTTTC AGGAGATAAC TAGACATTTT TAGTAATCAA
  R
  GAAGAACATT CTGTGTGTTG TCAGATAAGG GCTACAACAT AATCTATATA TACAATATAA
  TCTATATATA TACTGGCCGG TTCCTACTTA TAGACTTTTA GTTTACACTC TATGCAGTGG
  TCCACAATAG AAATGAACTG TTTACACAGC TTACAGAATA AGATTATTTT TCTGACTTTT
  GTGTTGTGTA CTTTTATGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320653591	CHEV_3_10441228	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs233590282					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:10506288 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12984	CpG island 12984	993 bp distal
Rr573640	regulatory region 573640	1152 bp distal
Rr573641	regulatory region 573641	1502 bp distal
Rr573642	regulatory region 573642	636 bp distal
Snx16	sorting nexin 16	1126 bp upstream
Tssr32622	transcription start site region 32622	1251 bp upstream
Tssr32623	transcription start site region 32623	1222 bp upstream
Tssr32624	transcription start site region 32624	1206 bp upstream
Tssr32625	transcription start site region 32625	1101 bp upstream