rs233590512 SNP Detail

Summary

• ID
  rs233590512
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:81472629 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTAGTGAG GCAGAAACTT
  TGTAAAATAT GTTTCTTCAT CTAGTAAACA TGAAATAACC AGCATGGAGC CCTAAAATTC
  AGTACTAAGG TTTTGACACT ACAGGGTCTC TCTAATCAGT TGACATAGAA TTGCTTCAAG
  TATTAATAAG AATGTAAAAA ACTTAAATTT TAAGTTTTTC CTTCTTTTCT CCCTCCCTCC
  T
  TCCTTTTTTT CTTGTTTGTT TGAGACAGGC CTCTTCATGT AACCCTGGCT GTCCTGGAAC
  TTGCTCAGTA AAACATGCTG GTCTTGAACT CACAGAGGTC CACCTGCCTC TGCCTCCCAA
  AGTCTGGGAT GAAAGTTATA TGCCACCACC ACCAGACTAC AAACTTTGAT GTATCTTTAT
  ATATTTTAAA CATTGTTAAA                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BUB/BnJ	C3H/HeJ	C57BL/6J	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	NOD/ShiLtJ	NON/ShiLtJ	PL/J	QSi3/Ianm	RIIIS/J	SM/J	SPRET/EiJ	ST/bJ	ZALENDE/EiJ
ss389224723	MGP_WTSI_13_81463509	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BUB/BnJ	C3H/HeJ	C57BL/6J	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	NOD/ShiLtJ	NON/ShiLtJ	PL/J	QSi3/Ianm	RIIIS/J	SM/J	SPRET/EiJ	ST/bJ	ZALENDE/EiJ
rs233590512					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss389224723	MGP_WTSI_13_81463509	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:81472629 () rs orientation: forward

Symbol	Name	Function Class
Adgrv1	adhesion G protein-coupled receptor V1	within coordinates
Rr277293	regulatory region 277293	1429 bp distal
Rr285047	regulatory region 285047	346 bp distal
Rr285048	regulatory region 285048	971 bp proximal