rs233598208 SNP Detail

Summary

• ID
  rs233598208
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:29735643 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGGGGGGG CCGGGCTTGG
  CTCCGCGAGG CCCGTGCATT CCAGAGAGCA GGGCCAGCTA GAGCAACAAA GGAGCCCGGT
  AGTCGGCAGG GAGAGCTCAG GGGGCTGCGG CGCGCTCGCG CGGAGGTGGC TGCTGGGCCG
  CGGGCTGGCG TGGGGGCGGA GCCGGGGACC CACTCCCGCA CCCCCCCCCC CCCCCCGGCC
  R
  GCGCCTGGCC TCCATCGAGG GGCTGGGAGT CGGTTTTAAT GGTGGGAGAG GGAATGGGGC
  TGGAGATCGG GGCCCCGGAG GGTTCCCAGG GTTGAAGACA GCTTCGATCT CCAGGCCAGG
  GAGTCCGGGG TCTGTGCATC CTGGCCCGGG CCTGCGCTGC TCAACATGGG GCCCGGGTTC
  CAAAGTTTGC AAAGTTGGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss367819806	MGP_WTSI_6_29685644	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs233598208					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367819806	MGP_WTSI_6_29685644	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:29735643 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17242	CpG island 17242	within coordinates
Rr627623	regulatory region 627623	within coordinates
Smo	smoothened, frizzled class receptor	within coordinates
Tssr55287	transcription start site region 55287	97 bp downstream
Tssr55288	transcription start site region 55288	15 bp downstream
Tssr55289	transcription start site region 55289	within coordinates
Tssr55290	transcription start site region 55290	23 bp upstream
Tssr55291	transcription start site region 55291	481 bp upstream