rs233600332 SNP Detail

Summary

• ID
  rs233600332
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:92470441 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGCGCTGAA GATGTCTGAA GATAATAAGA AAGCTAGATA
  ATTTAAGGAA GGAAGGAAGG AAGGAAGGAA GGAAGGAAGG AAGGAAGGAA GGAAGGAAGG
  R
  AGGGAGGGAG AAAGGAAGGA AGGCAGGCAA TCAGGTGTAG TAGCACACAC CTTTAACCCC
  AGCATTCAGG AGGCAGTAGA ATACAGATAT GTATGAATT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321612235	CHEV_5_92751608	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs233600332					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:92470441 () rs orientation: forward

Symbol	Name	Function Class
Cxcl9	C-X-C motif chemokine ligand 9	within coordinates
Rr614602	regulatory region 614602	395 bp distal
Rr614603	regulatory region 614603	665 bp proximal
Tssr47287	transcription start site region 47287	402 bp upstream
Tssr47288	transcription start site region 47288	1185 bp upstream
Tssr47289	transcription start site region 47289	1202 bp upstream
Tssr47290	transcription start site region 47290	1214 bp upstream
Tssr47291	transcription start site region 47291	1255 bp upstream
Tssr51864	transcription start site region 51864	150 bp downstream
Tssr51865	transcription start site region 51865	228 bp downstream
Tssr51866	transcription start site region 51866	517 bp downstream
Tssr51867	transcription start site region 51867	1109 bp downstream
Tssr51868	transcription start site region 51868	1165 bp downstream
Tssr51869	transcription start site region 51869	1211 bp downstream
Tssr51870	transcription start site region 51870	1253 bp downstream
Tssr51871	transcription start site region 51871	1287 bp downstream