rs233605680 SNP Detail

Summary

• ID
  rs233605680
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:76806979 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTAGTTGTT GAATTATATA
  ATAAGATGGC TAGCGGTCAT TTGGCATTGT CTGTGATTCG GGTATCTGAA TACAGTGATC
  GATTTTGAGT AATTTTTAAA GAGTCGACAA AAGGAAGGCA CCTTGGCCAC CACCTTTATT
  GCTTGGCTTT TTTTTTCCCC CAGAGAAAAC TGCCTATAAG AAAAAAGAAA TTCAAGGCCA
  R
  TTTTAAAAAG AAACATTTGA AAATGTATCT TGAATTGGTT ATATGGTTGC ATTATGCTAA
  CTCATAAATG TGTGTGGGTG AGGGGTGGGG TCCTGCAATA AAACCTTATT ATTTTTTTTT
  ACTATTGTTT ACTTAAATTT TACTCCAAAG TTTTTGTTTA GAGTCACCTG TGACAATTGA
  GAGACTTTCA AGACTTTTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss365523401	MGP_WTSI_5_77088157	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs233605680					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss365523401	MGP_WTSI_5_77088157	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:76806979 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
A730089K16Rik	RIKEN cDNA A730089K16 gene			777 bp upstream
Cpgi15996	CpG island 15996			646 bp distal
Cracd	capping protein inhibiting regulator of actin			Intron
				Noncoding-Transcript-Variant
Gm10430	predicted gene 10430			24 bp downstream
Rr613608	regulatory region 613608			792 bp distal
Rr613609	regulatory region 613609			96 bp distal
Tssr46728	transcription start site region 46728			1463 bp downstream
Tssr46729	transcription start site region 46729			1410 bp downstream
Tssr46730	transcription start site region 46730			1400 bp downstream
Tssr46731	transcription start site region 46731			1368 bp downstream
Tssr51429	transcription start site region 51429			796 bp upstream
Tssr51430	transcription start site region 51430			771 bp upstream
Tssr51431	transcription start site region 51431			740 bp upstream