CTTTTCTTTT CTCTTTCTTT CCTTCTTTCC TTCTTTCTTT CTTTCTTTCT TTCCTCTTTT CTTTTTCTTT CTTTCTTTTT TTTTTCTTTT TTGTTTTTAC CAACACGCCA TTGTACTCAC TCCTTATTCC AAGACGGGCT GCGCGCTCCG AGCTGCACGG GTAGGCATTT TCCCCGGCTT TGTTTTACAA GGTGGGGAGA R CGGGGCTGGA GGCGGGAGGG GTATAGAGGG GGGAGCGTGA GAAGAAACGA AATCGCCGGA AGGAGAGGAC ACCAGCGGTG GCAGGCTGGG CAGAGGGCGA GGCCGAGGCC AAGTTGGGAT CGGACGACGA CGCCCCCGCG CGCGATGGGT CACCCCGATT GCGTGGCCGC CTGGGGTCCC GCGCGGGCCC TGGGTGCGCT R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129P2/OlaHsd |
129S1/SvImJ |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LG/J |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SM/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss352785892 | MGP_WTSI_1_191167260 | EVA_MGPV3 | EVA_MGPV3 | f | SNP | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | A | G | G | G | G |
SNP Consensus Information | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SNP | Consensus Type | 129P2/OlaHsd |
129S1/SvImJ |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LG/J |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SM/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
||||
rs233609317 | SNP | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | A | G | G | G | G |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss352785892 | MGP_WTSI_1_191167260 | SC_MOUSE_GENOMES | SC_MOUSE_GENOMES | f | SNP | A/G |
Location: Chr1:189075578 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
A430027H14Rik | RIKEN cDNA A430027H14 gene | within coordinates | ||||||
Cpgi1195 | CpG island 1195 | within coordinates | ||||||
Kcnk2 | potassium channel, subfamily K, member 2 | Intron | ||||||
mRNA-UTR | ||||||||
Noncoding-Transcript-Variant | ||||||||
Rr425779 | regulatory region 425779 | 1540 bp distal | ||||||
Rr425780 | regulatory region 425780 | 237 bp distal | ||||||
Rr425781 | regulatory region 425781 | 81 bp distal | ||||||
Rr425782 | regulatory region 425782 | within coordinates | ||||||
Rr425783 | regulatory region 425783 | 61 bp proximal | ||||||
Rr425784 | regulatory region 425784 | 316 bp proximal | ||||||
Rr425785 | regulatory region 425785 | 574 bp proximal | ||||||
Rr425786 | regulatory region 425786 | 614 bp proximal | ||||||
Rr425787 | regulatory region 425787 | 801 bp proximal | ||||||
Tssr15712 | transcription start site region 15712 | 23 bp upstream | ||||||
Tssr15713 | transcription start site region 15713 | 326 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/18/2025 MGI 6.24 |
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