rs233631485 SNP Detail

Summary

• ID
  rs233631485
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:85415821 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTAACTTGC CCAGAGTACG
  TGGTGGGACT GAGATTCAAA GACAGTGAAT ACTATTCTAG AGCCTGAGTT AACCTACAAG
  GTGCACACAG AAGACATCTA AAGGTGCAGA GTGCCTCCGC TTTTTGCCCT GAATTAAACT
  AGTGAAACTC CCTTGTAGAA GAGTTGTATT ATTAAGAATC ACTGGTGTAG TGTAGCCTGC
  R
  CACTTCCTTC CCTAGAAGAG TCTTGACCCT GGTCGCCCAC TGTAGGTAAT GTCTCTAATT
  GGTCAGTTAT TGTCATGTGA TTGGCCCGCC CTCTTTGCCA ACATGGCGGC TCCCAGGCCC
  TAATGCGAGA AGCATGCACC GTGACTCGTT GGATCCTGTG AGCGGAAGGG AGACGCTTGT
  CCGGGTGGGT GGGTGGGTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375404320	MGP_WTSI_8_87213091	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs233631485					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375404320	MGP_WTSI_8_87213091	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:85415821 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20705	CpG island 20705	1156 bp distal
Cpgi20706	CpG island 20706	289 bp proximal
Nacc1	nucleus accumbens associated 1, BEN and BTB (POZ) domain containing	1293 bp upstream
Rr666573	regulatory region 666573	1301 bp distal
Rr666574	regulatory region 666574	1929 bp distal
Rr666575	regulatory region 666575	957 bp distal
Rr666576	regulatory region 666576	within coordinates
Rr666577	regulatory region 666577	30 bp proximal
Rr666578	regulatory region 666578	600 bp proximal
Trmt1	tRNA methyltransferase 1	within coordinates
Tssr78430	transcription start site region 78430	77 bp upstream
Tssr78431	transcription start site region 78431	116 bp upstream
Tssr82112	transcription start site region 82112	1621 bp upstream
Tssr82113	transcription start site region 82113	1573 bp upstream
Tssr82114	transcription start site region 82114	1308 bp upstream
Tssr82115	transcription start site region 82115	1282 bp upstream