rs233634236 SNP Detail

Summary

• ID
  rs233634236
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:60554077 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTGCTTGA ACACGCAGTG
  GGCATACTGA TACGGTTTAG CAGCTTGCAA CTGCTGTAGG GTTTGAGGAA TGTTGGAGCA
  AGAACAGAGA AAGCTGAGAG ACCCAGGTTT GAATCCAGAC TCCACTGGCT GTGGGATTTT
  AGAAAAACTG CTAGCATCTG AGCTTATCCA TCAGAAGTGT GTGTGTGGGG GGGGGGGGGG
  A
  GGGGGTGGAG GTGGGGGTAG GAGGGTAGGG TATAAGTGTG ATGAAACTTC CAAACCACCT
  TTCATATCTC TCTTGATTCC AGGAGCCTTC CTTAATGGGC TGTTAATTTC CTGTAATGGA
  AGCACATATT TGTCCTTTTA AATGAACTCA GATGTGAGAA AACATTTCCA TTTGAAATTC
  AAAACCTGAC TCCAGTTTTG                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	MA/MyJ	RF/J	RIIIS/J
ss354165823	MGP_WTSI_2_60561790	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	MA/MyJ	RF/J	RIIIS/J
rs233634236					SNP	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354165823	MGP_WTSI_2_60561790	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:60554077 () rs orientation: forward

Symbol	Name	Function Class
Itgb6	integrin beta 6	1090 bp upstream
Tssr24212	transcription start site region 24212	1191 bp upstream
Tssr24213	transcription start site region 24213	1076 bp upstream
Tssr24214	transcription start site region 24214	1062 bp upstream