rs233636891 SNP Detail

Summary

• ID
  rs233636891
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:106031341 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCAAGGGG GTGGGTGACT
  GCTGGGGGTC TTGGCCTAAG ACCTCAGCCT AATGCTTTCT GCAGTGTTTG CCCCCCTCCT
  CCGACTTTCT CCACCTCCCG GAGACCACGA TTACATCTAC AACCTGGACG AGAGTGAAGG
  TGTCTGTGAT CTCTTTGATG TTCCTGTTCT CAAACTCTGA CTGACAGGGA CATGTCCTGT
  R
  CAGCTGCAAC CCAGACTGTC TGGGCCTGGA GCCAACTAGG GACTGCCCCC CACCCCCACC
  CTAACCCCAA GAGCCCAACT CTTGGCTTAC TCAGCCTTTT CTGGTCGCTC AGTTCGGGCT
  GTGCTCTCCT GTCTTGCACT GGCACTTGTG ACTGTGCTAG CATAGCTGGG CAGAGAGCTT
  AGCCCTCTCT ACATGGAGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375910250	MGP_WTSI_8_107828609	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs233636891					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375910250	MGP_WTSI_8_107828609	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:106031341 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20925	CpG island 20925	897 bp proximal
E2f4	E2F transcription factor 4	within coordinates
Elmo3	engulfment and cell motility 3	899 bp upstream
Rr668857	regulatory region 668857	591 bp distal
Rr668858	regulatory region 668858	95 bp distal
Rr668859	regulatory region 668859	410 bp proximal
Rr668860	regulatory region 668860	988 bp proximal
Tssr79128	transcription start site region 79128	605 bp downstream
Tssr79129	transcription start site region 79129	565 bp downstream
Tssr79130	transcription start site region 79130	112 bp downstream
Tssr79131	transcription start site region 79131	37 bp upstream
Tssr79132	transcription start site region 79132	863 bp upstream