rs233649273 SNP Detail

Summary

• ID
  rs233649273
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:70703264 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGTGTTCA GACTCCCAAA
  CATCAGGAGT GTCAGATAAA CTGGTCTGAA TCTCTGTCTG AAGCATGGAA CTGAAAAGAA
  TGTAGTTTCA GGGAAGAAAG GCAATAGAAG GAAGCCTGAG AATATCTTCA AAGGGTCAGA
  CTCAATTTAC TTTCTAAAGA AGTAGCTAGG AACTAGGGAA TAACTTAGAA ACAACAAGAT
  Y
  GTATATATGT GCATCCTGGC CCCATTGTTC CTTATCTGTA GGGATAAGCG TGCTTTTTTG
  TGTGTCTGTA TATAACATAA CTGTTTACAC ATAATACACT GAAATGGAGC CCTTCCTTGT
  TACTTCATAC CATCCTCTGT GCTTCCTTCC TCAGGGGCTG ATGCTGCACC AACTGTATCC
  ATCTTCCCAC CATCCAGTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321815801	CHEV_6_70676274	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs233649273					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:70703264 () rs orientation: forward

Symbol	Name	Function Class
Gm68839	predicted gene, 68839	166 bp downstream
Igk	immunoglobulin kappa chain complex	within coordinates
Igkc	immunoglobulin kappa constant	155 bp upstream
Rr158	regulatory region 158	329 bp distal
Rr150202	regulatory region 150202	within coordinates
Rr399684	regulatory region 399684	845 bp downstream
Rr399685	regulatory region 399685	433 bp downstream
Rr399686	regulatory region 399686	231 bp upstream
Tssr1880	transcription start site region 1880	570 bp upstream
Tssr56956	transcription start site region 56956	447 bp downstream
Tssr56957	transcription start site region 56957	150 bp upstream
Tssr56958	transcription start site region 56958	197 bp upstream
Tssr56959	transcription start site region 56959	215 bp upstream
Tssr56960	transcription start site region 56960	238 bp upstream
Tssr56961	transcription start site region 56961	252 bp upstream
Tssr56962	transcription start site region 56962	260 bp upstream
Tssr56963	transcription start site region 56963	309 bp upstream
Tssr56964	transcription start site region 56964	324 bp upstream
Tssr56965	transcription start site region 56965	330 bp upstream
Tssr56966	transcription start site region 56966	341 bp upstream
Tssr56967	transcription start site region 56967	356 bp upstream
Tssr56968	transcription start site region 56968	380 bp upstream
Tssr56969	transcription start site region 56969	416 bp upstream
Tssr56970	transcription start site region 56970	429 bp upstream
Tssr56971	transcription start site region 56971	449 bp upstream
Tssr56972	transcription start site region 56972	475 bp upstream
Tssr56973	transcription start site region 56973	513 bp upstream
Tssr56974	transcription start site region 56974	545 bp upstream
Tssr56975	transcription start site region 56975	578 bp upstream
Tssr61321	transcription start site region 61321	202 bp downstream
Tssr61322	transcription start site region 61322	367 bp downstream
Tssr61323	transcription start site region 61323	382 bp downstream
Tssr61324	transcription start site region 61324	472 bp downstream
Tssr61325	transcription start site region 61325	538 bp downstream
Tssr61326	transcription start site region 61326	573 bp downstream
Tssr61327	transcription start site region 61327	587 bp downstream
Tssr61328	transcription start site region 61328	678 bp downstream