rs233650070 SNP Detail

Summary

• ID
  rs233650070
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:20292999 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGATATGCC AATTAAGGGG
  AGATTTTTCT GCCACCGGGC ATAGTTGTTA ACTTTTCTCC AGCTCCTCTG AGGGAGCCAC
  ATCGATTTTA TTTTATTTTA TTTTTTTAAT CCTCCCAGCC TTTTCCTCCT GCTTTTCGGA
  GCAGAGTTTT GGTGGAATTG GGCTTTAAAT TACACAGGGC AAACAGCGTT CATTATTTGT
  R
  AGGAAGAAAG TGGGGTGGGA AGAAAGTGTG GGGGGGGGGG ACTCTTTAGT GAGTGTCCTT
  AATGGTGGCA TGTGAAGATA CACTTAAGAG TTTATCTCTT TGCAGCCCTA GGACATACGT
  ACCTTGTAGG GCTTTCACAA GAAACTTGTT TGACCACTCC ACTGGCGTTG AGTCACAAGG
  AAAGATGTGC ACAAGGGTCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss403198133	MGP_WTSI_X_20003886	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs233650070					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss403198133	MGP_WTSI_X_20003886	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:20292999 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22644	CpG island 22644	289 bp distal
Jade3	jade family PHD finger 3	within coordinates
Rr690392	regulatory region 690392	1062 bp distal
Rr690393	regulatory region 690393	1112 bp distal
Rr690394	regulatory region 690394	171 bp distal
Rr690395	regulatory region 690395	767 bp distal
Rr690396	regulatory region 690396	412 bp distal
Tssr160640	transcription start site region 160640	1382 bp downstream
Tssr160641	transcription start site region 160641	998 bp downstream
Tssr160642	transcription start site region 160642	966 bp downstream