rs233658628 SNP Detail

Summary

• ID
  rs233658628
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:34994003 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCAAGGAGG GGGAGGATGG
  GGGGGGGGGG TGTGCGCCGA CCCGGAAACG CCATATAAGG AGCAGGAAGG ATCCCCCGCC
  GGAACAGACC TTATTTGGGC AGCGCCTTAT ATGGAGTGGC CCAATATGGC CCTGCCGCTT
  CCGGCTCTGG GAGGAGGGGC GAGCGGGGGT TGGGGCGGGG GCAAGCTGGG AACTCCAGGC
  K
  CCTGGCCCGG GAGGCCACTG CTGCTGTTCC AATACTAGGC TTTCCAGGAG CCTGAGCGCT
  CGCGATGCCG GAGCGGGTCG CAGGGTGGAG GTGCCCACCA CTCTTGGATG GGAGGGCTTC
  ACGTCACTCC GGGTCCTCCC GGCCGGTCCT TCCATATTAG GGCTTCCTGC TTCCCATATA
  TGGCCATGTA CGTCACGGCG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss400248333	MGP_WTSI_18_35020604	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs233658628					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss400248333	MGP_WTSI_18_35020604	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:34994003 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9830	CpG island 9830	within coordinates
Egr1	early growth response 1	257 bp upstream
Rr370358	regulatory region 370358	205 bp upstream
Rr405587	regulatory region 405587	within coordinates
Rr535727	regulatory region 535727	1117 bp distal
Rr535728	regulatory region 535728	918 bp distal
Tssr150487	transcription start site region 150487	11 bp upstream
Tssr150488	transcription start site region 150488	250 bp upstream
Tssr150489	transcription start site region 150489	1520 bp upstream
Tssr150490	transcription start site region 150490	1546 bp upstream
Tssr150491	transcription start site region 150491	1574 bp upstream
Tssr150492	transcription start site region 150492	1646 bp upstream
Tssr150493	transcription start site region 150493	1723 bp upstream
Tssr150494	transcription start site region 150494	1979 bp upstream
Tssr152831	transcription start site region 152831	524 bp upstream
Tssr152832	transcription start site region 152832	477 bp downstream
Tssr152833	transcription start site region 152833	1757 bp downstream
Tssr152834	transcription start site region 152834	1816 bp downstream