rs233659715 SNP Detail

Summary

• ID
  rs233659715
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:30753049 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACTAGATC TGTAAGAAGC
  TGGGCTAGAA GACTCTGTTG GATGAGTGTC TTGGGTGGTG GTCCCTGCAA GGCCAGTCTT
  TTTTTTTTTT TTTTTTCGAG ACAGGGTTTC TCTGTGTAGC CCTGGATGTC CTGGAACTCA
  CTTTGTAGAC CAGGCTGGCC TCGAACTCAG AAATTCACCT GCCTCTGCCT CCCAAGTGCT
  R
  GGATTAAAGG CATGAGCCAC CACCGCCCAA GGATAGTAAA TCTGCAGGGC TGTAAGAGTA
  GGCAGCTCCC ACCAAAGATT CATCAGTTTG TGCTGTTCCT GAGGGTGAGC GGGGCTTTAA
  GGAGAGGCCC CTGAAGCAAC TTCCAGGCCA GCCACTGACT ACAGCTGCAG CCCTTCAGTG
  AGGATGCCCT GGGTGTCCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325132330	CHEV_16_30934317	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs233659715					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:30753049 () rs orientation: forward

Symbol	Name	Function Class
C330004M20Rik	RIKEN cDNA C330004M20 gene	773 bp downstream
Gm46565	predicted gene, 46565	within coordinates
Gm61246	predicted gene, 61246	1415 bp upstream
Rr514366	regulatory region 514366	513 bp distal
Rr514367	regulatory region 514367	344 bp proximal
Rr514368	regulatory region 514368	1388 bp proximal
Rr514369	regulatory region 514369	1902 bp proximal
Tssr140722	transcription start site region 140722	815 bp upstream
Tssr140723	transcription start site region 140723	723 bp upstream