rs233668911 SNP Detail

Summary

• ID
  rs233668911
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:74720768 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    tttcttacc tgcaaagtgc aatgatttgg
  gcaagctgac ttcaaagatc tttctgactG TACCTAGGGA CAGTCCTAAG CCCTGCAGCC
  AAGATAAAGA CTGACTGGCG AGCTTAGGAG AGTGCGCGGT TCCAACCCAA CACAGTGAGC
  R
  ACCCCGCCCC GCGCCCAGCG GGCCGCTAGG GTAGCGCGCG GCTTCCGCCC TCCACGTTGT
  TGTTCCTGAT TTAGGCCACG CCTCCTCGGC CTGGGCTTTG GACGCTTCTC CTTTTGATTA
  CTGGTGCCGG GGCCCAACAA CGAGGTGCCC                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323749906	CHEV_11_74643444	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs233668911					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:74720768 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3246	CpG island 3246	within coordinates
Gm74357	predicted gene, 74357	3 bp downstream
Mnt	max binding protein	978 bp upstream
Rr402716	regulatory region 402716	1184 bp downstream
Rr402717	regulatory region 402717	289 bp upstream
Rr450974	regulatory region 450974	1656 bp distal
Rr450975	regulatory region 450975	1162 bp distal
Rr450976	regulatory region 450976	142 bp proximal
Rr450977	regulatory region 450977	857 bp proximal
Rr450978	regulatory region 450978	1034 bp proximal
Rr450979	regulatory region 450979	1275 bp proximal
Tssr102911	transcription start site region 102911	946 bp upstream
Tssr102912	transcription start site region 102912	965 bp upstream
Tssr102913	transcription start site region 102913	993 bp upstream
Tssr102914	transcription start site region 102914	1272 bp upstream
Tssr109144	transcription start site region 109144	40 bp upstream
Tssr109145	transcription start site region 109145	717 bp downstream
Tssr109146	transcription start site region 109146	1852 bp downstream