rs233670553 SNP Detail

Summary

• ID
  rs233670553
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:175458200 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTTTTTTA AAAAGAGAAG
  TGAATTCCAG CAATCCAGCA GATATGAGCT AACCAGAGCA AAGTCTGTTA ACAAGAAATG
  TTGAACCACC AGGGGCAAAG GCAAGAGATA AGAATCTTCC AAGGACGTTC CATCCCACGT
  AGCAGAAATA CATCAAGGTT TCAGAACAGT GGGAACACTG GGAAAATAGA AATATGACCA
  Y
  GAAGCTGGAG CTACAGGACA AAATCCAGAT GGATCTTAAG AAGCACAAAG CTGAGGAAGA
  AGTCATTTAT GAGACAAAAC ATGGCTTGAA GAAATAGCCC ATGGTAACTA GAATGCTCGC
  TTAGCATGTG TGAGGCCTGA GGCAGCAGAC TACTGGAAAG CTGGTGCTAT TTTCTTTCTT
  GGACTCTGTG AAAGGCACAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352481868	MGP_WTSI_1_177560765	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	T	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs233670553					SNP	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	T	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352481868	MGP_WTSI_1_177560765	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:175458200 () rs orientation: forward

Symbol	Name	Function Class
Kmo	kynurenine 3-monooxygenase	1559 bp upstream
Rr396618	regulatory region 396618	1184 bp upstream
Tssr10313	transcription start site region 10313	1334 bp upstream
Tssr10314	transcription start site region 10314	1362 bp upstream
Tssr10315	transcription start site region 10315	1381 bp upstream
Tssr10316	transcription start site region 10316	1410 bp upstream
Tssr10317	transcription start site region 10317	1430 bp upstream
Tssr10318	transcription start site region 10318	1462 bp upstream
Tssr10319	transcription start site region 10319	1470 bp upstream
Tssr10320	transcription start site region 10320	1486 bp upstream
Tssr10321	transcription start site region 10321	1507 bp upstream
Tssr10322	transcription start site region 10322	1521 bp upstream
Tssr10323	transcription start site region 10323	1535 bp upstream