rs233691202 SNP Detail

Summary

• ID
  rs233691202
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:137178139 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              NNNNNNNNNN NNNNNNNNNN
  NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN
  NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNTAACTTCA GCAGTGGTGG TGACATCAGC
  AGTGGTGGTG ACTTCAGCAG TGGTGGTGAC ATCAGCCGTT GTGGTGACAT CAATAGTGGT
  K
  GTGACATCAG CAGTGGTTGT GACATCAGCA GTGGTGGTGA CATCAGCAGT GGTGGTGACA
  TCACCAGTGG TTGTGATTTC AGCAGTGGTT GTGACTTCAG CAGTGGTGGT GACATCAGCA
  GTGGTGGTGA CATCACCAGT GGTTGTGATT TCAGCAGTGG TTGTGACTTC AGCAGTGGTG
  GTGACATCAG CAGTGGTGGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	PWK/PhJ	QSi3/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366873408	MGP_WTSI_5_137625387	EVA_MGPV3	EVA_MGPV3	f	SNP	T	G	G	G	G	G	T	T	T	T	T	T	T	G	G	T	G	T	T	G	T	T	T	G	T	G	T	T	T	G	G	G
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	PWK/PhJ	QSi3/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs233691202					SNP	T	G	G	G	G	G	T	T	T	T	T	T	T	G	G	T	G	T	T	G	T	T	T	G	T	G	T	T	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366873408	MGP_WTSI_5_137625387	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:137178139 () rs orientation: forward

Symbol	Name	Function Class
Muc17	mucin 17, cell surface associated	within coordinates
Tssr1677	transcription start site region 1677	23 bp upstream
Tssr1678	transcription start site region 1678	1193 bp downstream
Tssr49309	transcription start site region 49309	487 bp upstream
Tssr49310	transcription start site region 49310	847 bp upstream
Tssr49311	transcription start site region 49311	861 bp upstream
Tssr49312	transcription start site region 49312	1241 bp upstream
Tssr49313	transcription start site region 49313	1489 bp upstream
Tssr49314	transcription start site region 49314	1760 bp upstream
Tssr49315	transcription start site region 49315	1776 bp upstream
Tssr53919	transcription start site region 53919	347 bp downstream
Tssr53920	transcription start site region 53920	363 bp downstream
Tssr53921	transcription start site region 53921	518 bp downstream
Tssr53922	transcription start site region 53922	559 bp downstream
Tssr53923	transcription start site region 53923	600 bp downstream
Tssr53924	transcription start site region 53924	614 bp downstream
Tssr53925	transcription start site region 53925	652 bp downstream
Tssr53926	transcription start site region 53926	683 bp downstream
Tssr53927	transcription start site region 53927	832 bp downstream
Tssr53928	transcription start site region 53928	850 bp downstream
Tssr53929	transcription start site region 53929	887 bp downstream
Tssr53930	transcription start site region 53930	952 bp downstream
Tssr53931	transcription start site region 53931	977 bp downstream
Tssr53932	transcription start site region 53932	993 bp downstream
Tssr53933	transcription start site region 53933	1031 bp downstream
Tssr53934	transcription start site region 53934	1063 bp downstream
Tssr53935	transcription start site region 53935	1114 bp downstream
Tssr53936	transcription start site region 53936	1135 bp downstream
Tssr53937	transcription start site region 53937	1225 bp downstream
Tssr53938	transcription start site region 53938	1261 bp downstream
Tssr53939	transcription start site region 53939	1315 bp downstream
Tssr53940	transcription start site region 53940	1491 bp downstream
Tssr53941	transcription start site region 53941	1531 bp downstream
Tssr53942	transcription start site region 53942	1590 bp downstream
Tssr53943	transcription start site region 53943	1755 bp downstream
Tssr53944	transcription start site region 53944	1804 bp downstream
Tssr53945	transcription start site region 53945	1814 bp downstream
Tssr53946	transcription start site region 53946	1835 bp downstream
Tssr53947	transcription start site region 53947	1943 bp downstream