rs233703223 SNP Detail

Summary

• ID
  rs233703223
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:32419783 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGGACGCC GCGGGCGAGG
  CTGACACGCG CACACGGACG CAACCGAGCG GACTCGAGGA CCGCACTCAC CGGAACCGGC
  AGGCCGCAGC CGCCCCGCCA CCCCGCGCGC CGCTGCCCGC TCCAAGACCA CTTTCTGCGC
  TCGCCGCCGC CGACCGGCCG CTCCGCTGCT GGAGGCTGAT TGTCAAAAGT CGGTCGGAGC
  K
  GAGCCACCGG GAAACAGCTG CAGGAAGTGA CTGCGGAACC GGGAGGCGGC GGCGGCGGCG
  GCGGCGGAGG AGGAGGAGGA GGAGGAGGAG GAGGCAGGGC TCCCGGCAGC GCTACTGCGC
  ATGTGCACGG ACAAGCGGCT GCTCCCGCAG ACCCGGGACG CCGAGCAGGT GCGGAACAGC
  GACTCGAAAG GGTACCCTAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357463382	MGP_WTSI_3_32264556	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs233703223					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357463382	MGP_WTSI_3_32264556	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:32419783 () rs orientation: forward

Symbol	Name	Function Class
4930429B21Rik	RIKEN cDNA 4930429B21 gene	within coordinates
Rr374783	regulatory region 374783	within coordinates
Rr574945	regulatory region 574945	1136 bp distal
Rr574946	regulatory region 574946	within coordinates
Rr574947	regulatory region 574947	145 bp distal
Rr574948	regulatory region 574948	34 bp proximal
Rr574949	regulatory region 574949	35 bp proximal
Tssr28742	transcription start site region 28742	1230 bp downstream
Tssr28743	transcription start site region 28743	706 bp downstream
Tssr28744	transcription start site region 28744	308 bp downstream
Tssr28745	transcription start site region 28745	281 bp downstream
Tssr32923	transcription start site region 32923	479 bp upstream
Tssr32924	transcription start site region 32924	416 bp upstream
Tssr32925	transcription start site region 32925	208 bp upstream
Tssr32926	transcription start site region 32926	12 bp upstream
Tssr32927	transcription start site region 32927	9 bp downstream
Tssr32928	transcription start site region 32928	258 bp downstream
Zmat3	zinc finger matrin type 3	mRNA-UTR