rs233707174 SNP Detail

Summary

• ID
  rs233707174
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:108535129 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGCACCTG CAAAGGGGAG
  GCAGAGAGAG GCAGAGAGTG GACGCAAGGA AATAGAGCTC GCAGGTCAAG GCGTGACAGA
  ACTGCAGCAT GAGAGGGGTT TGGGTGAGTT CTAGAGCTGC CGTTGTGCAT ACAAGAAGAA
  AGGACAGAGT GTGGCTTGGG CTTGGTATTC CTTGTGAGGT GCCCCTGAGT GTACCAGTGG
  R
  TTGGTCAAGT AGAAAATTGA GTAAGCAGGG CTGCCAGGGC GCTTCACTGC CTGCCCGTGC
  TTCACTTCCC AGAGCCCACA TGATGGAAGG AGAAAACCTG CAGACGGTCC TCTGACTTCC
  ATGGGCAAGC AGTTGCACAT CCATAATTAA TCAGTATAAA AGAAAGGCAA ATTTTAACAG
  TACGTGTGAA GATGCAAATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322388652	CHEV_7_116079436	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs233707174					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:108535129 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19551	CpG island 19551	1013 bp distal
Eif3f	eukaryotic translation initiation factor 3, subunit F	within coordinates
Rr400539	regulatory region 400539	1464 bp downstream
Rr652952	regulatory region 652952	1495 bp distal
Rr652953	regulatory region 652953	1752 bp distal
Tssr68456	transcription start site region 68456	1492 bp downstream
Tssr68457	transcription start site region 68457	1394 bp downstream