rs233713463 SNP Detail

Summary

• ID
  rs233713463
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:72537657 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTTTTTT TTTTTTTTTT
  TTTAATTTAT TACGTATTTT CCTCAATGAC ATTTCCAATG CTATCCCAAA AGTCCCCCAT
  ACCCTCCCCC CCCCCACTTC CCTACCCACC CATTCTCATT TTTTTGACCC TGGCGTTCCC
  CTGTACTGGG GCATATAAAG TTTGTGTGTG TGTGATGGGC CTCTCTTTCC AGTGATGGCC
  R
  ACTAGGGCAT CTTTTGATAC ATATGCAGCT AAAGTCAAGA GCTCCGGGGT ACTGGTTAGT
  TCATAATGTT GTTGCACCTA CAGGGTTGCA GATCTCTTTA GCTCCTTAGA TACTTTCTCT
  AGCTCGGCAC TGTCTTTCCT ACACAGATAT CATGTCAGAA TCAAAGTTTG CTTTGTTTTA
  CAGCATCATT CTACCAAACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss403771577	MGP_WTSI_X_70739390	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs233713463					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss403771577	MGP_WTSI_X_70739390	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:72537657 () rs orientation: forward

Symbol	Name	Function Class
Bgn	biglycan	within coordinates
Rr4565	regulatory region 4565	57 bp distal
Rr6090	regulatory region 6090	657 bp distal
Rr7747	regulatory region 7747	916 bp proximal
Rr10758	regulatory region 10758	130 bp distal
Tssr5633	transcription start site region 5633	774 bp downstream
Tssr5634	transcription start site region 5634	646 bp downstream
Tssr5635	transcription start site region 5635	1001 bp downstream
Tssr161217	transcription start site region 161217	1990 bp downstream
Tssr161218	transcription start site region 161218	1977 bp downstream
Tssr161219	transcription start site region 161219	1916 bp downstream
Tssr161220	transcription start site region 161220	1313 bp downstream
Tssr161221	transcription start site region 161221	1254 bp downstream
Tssr161222	transcription start site region 161222	1239 bp downstream
Tssr161223	transcription start site region 161223	1069 bp downstream
Tssr161224	transcription start site region 161224	1015 bp downstream
Tssr161225	transcription start site region 161225	837 bp downstream
Tssr161226	transcription start site region 161226	786 bp downstream
Tssr161227	transcription start site region 161227	736 bp downstream
Tssr161228	transcription start site region 161228	547 bp upstream
Tssr161229	transcription start site region 161229	580 bp upstream
Tssr161230	transcription start site region 161230	604 bp upstream
Tssr161231	transcription start site region 161231	621 bp upstream
Tssr161232	transcription start site region 161232	672 bp upstream
Tssr161233	transcription start site region 161233	744 bp upstream
Tssr161234	transcription start site region 161234	764 bp upstream
Tssr161235	transcription start site region 161235	829 bp upstream
Tssr161236	transcription start site region 161236	872 bp upstream
Tssr161237	transcription start site region 161237	926 bp upstream
Tssr161238	transcription start site region 161238	962 bp upstream
Tssr161239	transcription start site region 161239	1011 bp upstream
Tssr161240	transcription start site region 161240	1025 bp upstream
Tssr161241	transcription start site region 161241	1061 bp upstream
Tssr161242	transcription start site region 161242	1094 bp upstream
Tssr161243	transcription start site region 161243	1258 bp upstream
Tssr161244	transcription start site region 161244	1282 bp upstream
Tssr161245	transcription start site region 161245	1377 bp upstream
Tssr161246	transcription start site region 161246	1533 bp upstream
Tssr161247	transcription start site region 161247	1556 bp upstream
Tssr161248	transcription start site region 161248	1825 bp upstream
Tssr163545	transcription start site region 163545	1988 bp upstream
Tssr163546	transcription start site region 163546	1924 bp upstream
Tssr163547	transcription start site region 163547	567 bp downstream
Tssr163548	transcription start site region 163548	673 bp downstream
Tssr163549	transcription start site region 163549	750 bp downstream
Tssr163550	transcription start site region 163550	805 bp downstream
Tssr163551	transcription start site region 163551	890 bp downstream
Tssr163552	transcription start site region 163552	1016 bp downstream
Tssr163553	transcription start site region 163553	1102 bp downstream
Tssr163554	transcription start site region 163554	1121 bp downstream
Tssr163555	transcription start site region 163555	1148 bp downstream