rs233718784 SNP Detail

Summary

• ID
  rs233718784
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:83483591 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAAAGAAC CGGCACACTG
  TCGCATCTAT TTCTAGCGAA TGAAACATGC CAGTAAACCA GTATAATTCT GGGGCTATCT
  AAAGCCTGCG TCAGGCTATT ACGTCCCCGT GGGTGAGTAG GTGGGCGGGT ACTGGGGCCC
  AATGTCTCCC AAAATCAAAA CCCGCGGTGC ACTGTGGGAG AAAGGCCTGA CATGCAGAAC
  Y
  GGCCGGCAGG TTGGGCGGTG GCAGCAGAAG GGGTCAGGTG GGCAGGGTGG GACAGATCTG
  AGGCCAACTT CTTTTCCCAG CCTCTCAGCC ACCTACTCGG CGGAGGCCAA GGCTCGACAG
  CCACTTTCTG GCCCTTACCG ATGTTGCCTT CAATGCAGAG CCTTCGGGGG CCGCCCCCGT
  CGTGCATGGC CCTGGCGTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369032979	MGP_WTSI_6_83456603	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs233718784					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369032979	MGP_WTSI_6_83456603	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83483591 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17605	CpG island 17605	within coordinates
Dguok	deoxyguanosine kinase	within coordinates
Rr399724	regulatory region 399724	268 bp upstream
Tssr1908	transcription start site region 1908	472 bp upstream
Tssr61663	transcription start site region 61663	349 bp upstream
Tssr61664	transcription start site region 61664	207 bp downstream
Tssr61665	transcription start site region 61665	221 bp downstream
Tssr61666	transcription start site region 61666	229 bp downstream
Tssr61667	transcription start site region 61667	256 bp downstream
Tssr61668	transcription start site region 61668	280 bp downstream
Tssr61669	transcription start site region 61669	286 bp downstream