rs233720682 SNP Detail

Summary

• ID
  rs233720682
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:96515848 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGTTCCTCC GAGGGGGGGT
  GATATACAGG TCTTATTTAA GGCTGAGCAT CCAGTTTTTT ATTCTCAGTG ACTAGTTATG
  AATCTCTGCG TTTAATACTG CCCATGAGGG GGTGGACTTC TCGAAGCAAA CATGACATCC
  TCACGAATTC CTATGCACAA GCACAATTAT TGGAAAGCAA CTTGGTGCAC ACATCACATC
  Y
  GTTTAGCAGA ACAACATCTG TACCTGCCCT ACTGGGGCTG TGACTTCCCC AGCCATAGGC
  TTTTTAACAG GTTTATAGTA CCAGATGTGA ATTTCCTCTG AAGGAGTTGC AGTCAGGAAG
  TGGTTGGTCA CCCCCATAGC AGACTTCCCA CTAGTGTGTC AGTAGGTGCC CTTTGCCTGG
  CAGGTCAGTG ATGTAGGAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323111061	CHEV_9_96534214	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs233720682					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:96515848 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22167	CpG island 22167	1812 bp distal
Rr684997	regulatory region 684997	1688 bp distal
Rr684998	regulatory region 684998	1437 bp proximal