rs233722499 SNP Detail

Summary

• ID
  rs233722499
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:9304237 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGTTGGTG GATAGTATAA
  AAACTGAGGC TTGAGACAAC CTGGTATTAA AGGTGAAAAG GTGACCACAC CCAGAGTCAG
  ATGGCTTAGG TGTGGTTTCA ACTTCTGAAT TGGAAGGAAG GTGTGGAACT CATTTGAGAT
  CCTATTGTTT ATCCTAGAGA GAGTCCCAGA AAATGCTTTT GCCTTACCCT CTTCTGGCAT
  R
  TCAAAGGGAA ATGTGAAACA ATGCATAACT ATGTATGTAA AAAGTGCTCT GAAACCATGA
  AGTTCCATGC AATATGACAG ATGACTAGTA AGGATCTTTG GAATTCCTTT TAGGGGGCCT
  GTGTCATTGT GATTTCCTTT CCTCCTTCTC TCCTACAACC AACCAGCATT ACTGGGACAT
  TTGGCAGCAT ACACTGGTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss403025290	MGP_WTSI_X_9015124	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs233722499					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss403025290	MGP_WTSI_X_9015124	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:9304237 () rs orientation: forward

Symbol	Name	Function Class
Cybb	cytochrome b-245, beta polypeptide	within coordinates
Tssr160518	transcription start site region 160518	1997 bp downstream
Tssr160519	transcription start site region 160519	1353 bp downstream
Tssr160520	transcription start site region 160520	1289 bp downstream
Tssr160521	transcription start site region 160521	1235 bp downstream
Tssr160522	transcription start site region 160522	1118 bp downstream
Tssr162876	transcription start site region 162876	1915 bp upstream
Tssr162877	transcription start site region 162877	1896 bp upstream
Tssr162878	transcription start site region 162878	1844 bp upstream
Tssr162879	transcription start site region 162879	1738 bp upstream
Tssr162880	transcription start site region 162880	1652 bp upstream
Tssr162881	transcription start site region 162881	1634 bp upstream
Tssr162882	transcription start site region 162882	1334 bp upstream
Tssr162883	transcription start site region 162883	944 bp upstream
Tssr162884	transcription start site region 162884	879 bp upstream
Tssr162885	transcription start site region 162885	843 bp upstream
Tssr162886	transcription start site region 162886	823 bp upstream
Tssr162887	transcription start site region 162887	785 bp upstream
Tssr162888	transcription start site region 162888	731 bp upstream
Tssr162889	transcription start site region 162889	713 bp upstream
Tssr162890	transcription start site region 162890	643 bp upstream
Tssr162891	transcription start site region 162891	615 bp upstream
Tssr162892	transcription start site region 162892	560 bp upstream
Tssr162893	transcription start site region 162893	455 bp upstream
Tssr162894	transcription start site region 162894	419 bp upstream
Tssr162895	transcription start site region 162895	363 bp upstream
Tssr162896	transcription start site region 162896	336 bp upstream
Tssr162897	transcription start site region 162897	305 bp upstream
Tssr162898	transcription start site region 162898	285 bp upstream
Tssr162899	transcription start site region 162899	145 bp upstream
Tssr162900	transcription start site region 162900	127 bp upstream
Tssr162901	transcription start site region 162901	98 bp upstream
Tssr162902	transcription start site region 162902	15 bp upstream
Tssr162903	transcription start site region 162903	34 bp downstream
Tssr162904	transcription start site region 162904	135 bp downstream
Tssr162905	transcription start site region 162905	219 bp downstream
Tssr162906	transcription start site region 162906	223 bp downstream
Tssr162907	transcription start site region 162907	296 bp downstream
Tssr162908	transcription start site region 162908	320 bp downstream
Tssr162909	transcription start site region 162909	1925 bp downstream
Tssr162910	transcription start site region 162910	1950 bp downstream