rs233736114 SNP Detail

Summary

• ID
  rs233736114
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:117548600 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCCAATTG GGCTTGTGTG
  CAGTTTCATG GGATTGGGGC ATGAGCAGGA TGGGGGGATG GGAGGACAGG GCAAAAGGCA
  AGCAGGCATG CACTCTTAGC TTAAAGCCCT GGGTTCCCTC CCCAGCACCT GTGGGAATGA
  TGCTGCACTT GTGTAATCCC AGCACTTTGG AGGTGAAGAC AGGAGGGTCA GAAGTTCAAA
  R
  CCGGGCGTGA TGCCGCACGC CTTTAATCCC AGCACTCGGG AGGCAGAGGC AGGTGGATTT
  CTGAGTTCGA GGCCAGCCTG GTCTACAGAG TGAGTTCCAG GACAGCCAGG GCTATACAGA
  GAAACCCTGT CTCGAAAAAA CCAAAAAAAA AAAAAAAAAA AAAAAAAACA AGTTCAAAGT
  CATCCTTAGC TACAGTGAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323498906	CHEV_10_117149751	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs233736114					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:117548600 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2237	CpG island 2237	1587 bp distal
Gm56970	predicted gene, 56970	1162 bp downstream
Gm67727	predicted gene, 67727	within coordinates
Mdm2	transformed mouse 3T3 cell double minute 2	1937 bp upstream
Rr212986	regulatory region 212986	1201 bp proximal
Rr224309	regulatory region 224309	999 bp distal
Rr385357	regulatory region 385357	144 bp downstream
Tssr95923	transcription start site region 95923	1748 bp downstream
Tssr95924	transcription start site region 95924	939 bp downstream
Tssr99468	transcription start site region 99468	1959 bp upstream
Tssr99469	transcription start site region 99469	1922 bp upstream