rs233737294 SNP Detail

Summary

• ID
  rs233737294
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:59439369 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGAAGGAA GATCAGTTTT
  GTCTGTGGGG CCCGCCCAAG TGCAGGGGGC ACTCCCCACT TCAGCAGGTA CCCTCATTTG
  CTTTCTCACC GGTGAACTAG CCCTACCTCT AAGGCAGGCA AATACACCCA TATAAGGGCT
  GAACTTGGGC TGCCTTAGGA AGAAACCGTT AAAATAAACT TCCTAGTCTC TTGTAACAAG
  Y
  TTTCTTGAAG ATTATTTCTG TCCAACAAAG AAAGAAGCCT GCTTTGGGAA GTAGTAGAGC
  ACCATGAAAG TGTGAACATG TCTCTAGGTG TTTGGGCAAA ACCAGTCTCC AGGAACCCTC
  ACAGGTCATT GCACAAATCC ACTGTTCAAG ACATTTTTAA AACAACCTTT ATCTCTACTT
  CTCATGCCCT TCTGCAAAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321141035	CHEV_4_59452241	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs233737294					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59439369 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14346	CpG island 14346	576 bp distal
Rr101075	regulatory region 101075	within coordinates
Susd1	sushi domain containing 1	736 bp upstream
Tssr37430	transcription start site region 37430	1194 bp downstream
Tssr37431	transcription start site region 37431	769 bp upstream
Tssr41933	transcription start site region 41933	1064 bp upstream
Tssr41934	transcription start site region 41934	943 bp upstream
Tssr41935	transcription start site region 41935	690 bp upstream