rs233739719 SNP Detail

Summary

• ID
  rs233739719
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:106478992 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCTCAGGA TAAGTGAGGA
  AGAGTCCAAG GTCCAGACAT TCCGGAAAGC CTAGTCTACA GGGGACTCTG CTTTATCACA
  CAGGGCACCC CAGTTCAACC TGCACACTAG AAGCCAGGTG GGCCCCTGAG GGAGACAGCA
  TAGAGCAAGA AGACAGCAGT CTCAGAGCAG GGAGCAGGAC CGGCTGGACA CTGATCCAGA
  K
  GAGTGAAGCC CAGGCATACC CAGGGCAGGC ATTCATTGGT TTTACCTAGG TATCTCCTGG
  TCCCTCACAG GGAACTGCGT CCTGTCACAG AGGAGGAAAG CGGAAGTATA AGGGGTAGTG
  CTTTTTATTA GGGATGGAGA AACAGAAGTA GAACCTAGCA CCTAGGCACC TTAGTTTTTG
  CTGTTTGGGC CCCTGCTGAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321246846	CHEV_4_106294400	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs233739719					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:106478992 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14527	CpG island 14527	588 bp proximal
Rr596780	regulatory region 596780	147 bp proximal
Tssr38185	transcription start site region 38185	629 bp upstream
Tssr38186	transcription start site region 38186	691 bp upstream
Tssr38187	transcription start site region 38187	733 bp upstream
Ttc22	tetratricopeptide repeat domain 22	654 bp upstream