rs233741289 SNP Detail

Summary

• ID
  rs233741289
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:49427785 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGATATACA TATGTGTGTG
  CATTCTGATA TATAGCCCCA TCTCACCATA AAGAACAAGT AAAATTATTT AAAGGGATTC
  AAACTTGCTT TTTCGGGAAT TGCAAATAAC CTTTGCATCA GGAAACTAGT TTTAATATTA
  TTTCAAACTA TATGCTATGT TTTTACGATC AATCATCCTG CTTTGAGAGA CTCGCATTCA
  Y
  GTAACCTTAA AATAACACAG CACACCCTTA ATCTGCATGC AAAACAATTT TCAAGCCGCC
  ATAAGCCTTG ACATATAAAA TCAGAGTATT GCAGCTCTCA CTGTACAAAA CCCAGTTTTT
  GCTCCTTGAA AGTAAACAGA AGAAAAAAAA AAAACCTTAC TTTGCCTGCT AATTTCTTCC
  ACGGGGTAAC AAAACAATAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss385922515	MGP_WTSI_12_50481989	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs233741289					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss385922515	MGP_WTSI_12_50481989	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:49427785 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4581	CpG island 4581	1959 bp proximal
Foxg1	forkhead box G1	1881 bp upstream
Gm34304	predicted gene, 34304	within coordinates
Gm56518	predicted gene, 56518	within coordinates
Rr465759	regulatory region 465759	914 bp proximal
Tssr113389	transcription start site region 113389	972 bp upstream
Tssr113390	transcription start site region 113390	1055 bp upstream
Tssr113391	transcription start site region 113391	1650 bp upstream
Tssr113392	transcription start site region 113392	1674 bp upstream
Tssr113393	transcription start site region 113393	1789 bp upstream
Tssr116231	transcription start site region 116231	822 bp downstream