rs233745511 SNP Detail

Summary

• ID
  rs233745511
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69299794 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTAGGGTGAC CCCGATGTGA CCCCAAGGTT CCCACCTAGG
  GTCCACATCT CTGATCAGAA ACTGGTAGCC CTCAGGGCAG TAACAGCAAG CTAAGACTGA
  R
  AGTGAGGAAA CCATTCACGA GCCGACCTGA GGGCAAGCCT CACACATCCA CCGAACTGGC
  AATGGTCCCC GCCAGACTGT TCAAGTTGTC CTCTGCCTA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323729419	CHEV_11_69222470	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs233745511					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69299794 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3128	CpG island 3128	within coordinates
Gm72933	predicted gene, 72933	786 bp downstream
Kdm6b	KDM1 lysine (K)-specific demethylase 6B	within coordinates
Rr247028	regulatory region 247028	within coordinates
Rr369256	regulatory region 369256	906 bp upstream
Rr402670	regulatory region 402670	72 bp downstream
Rr402671	regulatory region 402671	391 bp upstream
Tssr3543	transcription start site region 3543	244 bp upstream
Tssr102456	transcription start site region 102456	24 bp downstream
Tssr102457	transcription start site region 102457	313 bp upstream
Tssr102458	transcription start site region 102458	706 bp upstream
Tssr102459	transcription start site region 102459	726 bp upstream
Tssr102460	transcription start site region 102460	759 bp upstream
Tssr102461	transcription start site region 102461	802 bp upstream
Tssr102462	transcription start site region 102462	830 bp upstream
Tssr102463	transcription start site region 102463	1583 bp upstream
Tssr102464	transcription start site region 102464	1857 bp upstream
Tssr102465	transcription start site region 102465	1976 bp upstream
Tssr108662	transcription start site region 108662	1348 bp upstream
Tssr108663	transcription start site region 108663	1319 bp upstream
Tssr108664	transcription start site region 108664	1137 bp upstream
Tssr108665	transcription start site region 108665	406 bp upstream
Tssr108666	transcription start site region 108666	178 bp downstream
Tssr108667	transcription start site region 108667	424 bp downstream
Tssr108668	transcription start site region 108668	445 bp downstream
Tssr108669	transcription start site region 108669	460 bp downstream
Tssr108670	transcription start site region 108670	579 bp downstream
Tssr108671	transcription start site region 108671	916 bp downstream
Tssr108672	transcription start site region 108672	1400 bp downstream
Tssr108673	transcription start site region 108673	1428 bp downstream
Tssr108674	transcription start site region 108674	1472 bp downstream
Tssr108675	transcription start site region 108675	1639 bp downstream
Tssr108676	transcription start site region 108676	1684 bp downstream
Tssr108677	transcription start site region 108677	1728 bp downstream
Tssr108678	transcription start site region 108678	1744 bp downstream