rs233753099 SNP Detail

Summary

• ID
  rs233753099
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:123152398 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCCTCCTG CAGAATAGAA
  AACGCTACGG AGGGGTCTGG GAATGGCAGG CACAGGCTAA TGGCAGGCAC ATGCTAATGG
  CAGTAGTCCA GAGGCTTGGG CAGATGGCTC TTTGTGAGTT CGAAGCCAGC CTGGTCTATA
  TAACAAGTTT CAAACCAGGC AGAGCTATGT AGTCTCAAAA ATAAATAAAT ACAAACGGGG
  R
  CTAGCATTCT AAAATTAAAA TAAAAACCCT GTTACTATCC ACCTTTTTTT ATCTTTTTTT
  TTTCTGTACA CATTTACAGT CTCCTGAACT ATAATTGACT CGATGTTTGT GTGTCTTTTC
  TACAAGAGTG TTGGCTGCAA GGGTGCAGGG AATTTTGTCC CTCTTGTGTT TCGAGGCAAG
  GGCTCACTCC TCCTTCAAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366530678	MGP_WTSI_5_123464344	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs233753099					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366530678	MGP_WTSI_5_123464344	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:123152398 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16567	CpG island 16567	178 bp proximal
Gm2479	predicted gene 2479	within coordinates
Gm44574	predicted gene 44574	1461 bp upstream
Orai1	ORAI calcium release-activated calcium modulator 1	739 bp upstream
Rr399336	regulatory region 399336	448 bp upstream
Rr620045	regulatory region 620045	64 bp distal
Rr620046	regulatory region 620046	559 bp distal
Rr620047	regulatory region 620047	249 bp proximal
Rr620048	regulatory region 620048	1061 bp proximal
Tssr48743	transcription start site region 48743	675 bp upstream
Tssr48744	transcription start site region 48744	809 bp upstream
Tssr48745	transcription start site region 48745	945 bp upstream
Tssr48746	transcription start site region 48746	977 bp upstream
Tssr48747	transcription start site region 48747	1894 bp upstream
Tssr53182	transcription start site region 53182	1455 bp upstream
Tssr53183	transcription start site region 53183	505 bp downstream
Tssr53184	transcription start site region 53184	1560 bp downstream
Tssr53185	transcription start site region 53185	1611 bp downstream
Tssr53186	transcription start site region 53186	1634 bp downstream