rs233758337 SNP Detail

Summary

• ID
  rs233758337
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:184542367 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAAATCAGC TATGAGACAA
  GAAGGGCTTT GGAGCAAAAA TCTCCATTTC TTCTTCCTGA ACCAGTCGGT CAGCATGTCC
  ACTGGACCGG CCTGATCTGA GGCGAATGGC TTGTGTTAGC TTTAGAGAGC TGAGACGGGG
  AGGTCGCAGC CTCTGTTAGC CTGTGTCCTC TGCTGAAGGA GAGGCCTGAG GATCCTGATA
  Y
  GCAGCCTTCC AGTGATGCCC AGAGCTGGTG GGAGACCAGA CCTGAAGAGA GCAGAGCTGC
  TGAACCTTCG CTGAAGTCCC GGCGACAGGG GTCACTCCTC AGCTGGACTC TTAGTCGCTG
  TTTACAAATC CCAGGTTGCC CCCCCCCCCA CCCAGTGCAG AACCTTTATC TGACAAGAGC
  CTTGGGGAAA TAACACTCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320169568	CHEV_1_186634049	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs233758337					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:184542367 () rs orientation: forward

Symbol	Name	Function Class
Gm70890	predicted gene, 70890	1754 bp upstream
Mtarc1	mitochondrial amidoxime reducing component 1	Intron
Rr425289	regulatory region 425289	1958 bp distal
Rr425290	regulatory region 425290	1017 bp proximal
Rr425291	regulatory region 425291	1765 bp proximal
Tssr15650	transcription start site region 15650	810 bp downstream
Tssr15651	transcription start site region 15651	986 bp downstream
Tssr15652	transcription start site region 15652	1000 bp downstream
Tssr15653	transcription start site region 15653	1089 bp downstream
Tssr15654	transcription start site region 15654	1116 bp downstream
Tssr15655	transcription start site region 15655	1134 bp downstream