rs233767474 SNP Detail

Summary

• ID
  rs233767474
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:57954759 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTAGAAGTG AGCCAACTCT
  CTCAAGTTGT CCTCTGACCA CTGCCAATGG ATGCCCCACC CCTATATGTG AATATAAACC
  GAAACAGAAA GCCCCAACAA CAAAACCATA TTCAGCAAAT AACAAAGTGT TCTTTGCTTT
  TTTTTTGAGA CAGCCCAGCC TCCTGAGCGC TGGGGATTAG AGGCATGAGC CAACGCCTTG
  R
  TCTAACACGT GGTCTGTGAA GCACTGAGCA AAGTGTGTGT GTAGTTCAAG GAATAATTTT
  ATTCTTAAAG ATAAACACGG CAAATCAACT GTTGATTTCT GAGCCATTAT ATCATAGCCT
  ATTATTCCAC TCCTGTGTGG AGATTGACCC CAGGGGCCTT TAACTACCCA CACAGTCGTC
  AGAAATAAGG CTACATTTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss361657819	MGP_WTSI_4_57967631	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs233767474					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss361657819	MGP_WTSI_4_57967631	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:57954759 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14335	CpG island 14335	757 bp proximal
Gm35344	predicted gene, 35344	1993 bp upstream
Gm57068	predicted gene, 57068	425 bp upstream
Rr398279	regulatory region 398279	1549 bp upstream
Rr592846	regulatory region 592846	1582 bp distal
Rr592847	regulatory region 592847	669 bp distal
Rr592848	regulatory region 592848	within coordinates
Rr592849	regulatory region 592849	1006 bp proximal
Rr592850	regulatory region 592850	1642 bp proximal
Rr592851	regulatory region 592851	1668 bp proximal
Rr592852	regulatory region 592852	1975 bp proximal
Tssr1183	transcription start site region 1183	1552 bp downstream
Tssr1184	transcription start site region 1184	1657 bp downstream
Tssr37396	transcription start site region 37396	1863 bp upstream
Tssr41865	transcription start site region 41865	1226 bp upstream
Tssr41866	transcription start site region 41866	1524 bp downstream
Txn1	thioredoxin 1	Intron