rs233776494 SNP Detail

Summary

• ID
  rs233776494
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:43113696 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAACTCACC TCTGCCCGGC
  TGGATGATGC AGGGGTGTAC ACAGTTGAGG TCATCAGGGG AGGAGTCTCC CAGCAGATTC
  GAGAGTTTGT GGTGGGTGTA TTTGGTAAGT GGGGTCCGAG GTCCAGAGTG CAGGCTGCCG
  AGTGCCTGCT CTCCTCGCAG ACCTCTGGAC AAGTCTGTGC TGTGTGAATA TGCTTCCTTC
  Y
  TAGAAGAAAG AGCCTGTGGG TGGGGATAAG AGCAAAGGCA GGGACCAGAG CTCACCTTGT
  CTGAAGGAGG AGGTCTAAGC TGGACTCTTA GGTCTGAGAG AGGCCTGGAC CTCACTTAGG
  TGTGACGGGG GAGGGCTAGG GCCTGAATCC GTGGGACCGA GGGAATTAAG ACTGGGGTTT
  GGACTCAGGT CTGAAGGAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322197028	CHEV_7_50719642	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs233776494					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:43113696 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18932	CpG island 18932	559 bp proximal
Cpgi18933	CpG island 18933	1890 bp proximal
Etfbl	electron transferring flavoprotein, beta polypeptide like	685 bp downstream
Gm39000	predicted gene, 39000	within coordinates
Rr400282	regulatory region 400282	1458 bp upstream
Rr645966	regulatory region 645966	571 bp proximal
Rr645967	regulatory region 645967	1236 bp proximal
Rr645968	regulatory region 645968	1298 bp proximal
Rr645969	regulatory region 645969	1306 bp proximal
Rr645970	regulatory region 645970	1998 bp proximal
Tssr2211	transcription start site region 2211	1944 bp downstream
Tssr66006	transcription start site region 66006	1159 bp downstream
Tssr66007	transcription start site region 66007	1087 bp downstream
Tssr66008	transcription start site region 66008	1057 bp downstream
Tssr66009	transcription start site region 66009	1046 bp downstream
Tssr66010	transcription start site region 66010	1736 bp upstream
Tssr72134	transcription start site region 72134	20 bp upstream
Tssr72135	transcription start site region 72135	1291 bp downstream
Vsig10l	V-set and immunoglobulin domain containing 10 like	within coordinates