rs233778012 SNP Detail

Summary

• ID
  rs233778012
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:31196978 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTTTTAAC CCTCTTTTGC
  CTGGACCGCC CAGCTCAGGC TCTTTGCTTA TGTACCCAGC TCAGGCCTTC CCAAATACTT
  AACCCCACCA CCACCAGCAG CAGCAGCAGC AGGAAGAAGC AGCTGGTTCT CTTCTCAGCA
  ACCTTACCCC CTTACCTCTC TTTGACCTCC TTTAATCTCC TCCACAGCCT GGCCCTTGAC
  Y
  TCACAGATTC CTCTTACCTT TCTTCACCTG AAATGGCCTG CCCTTTACTG GGGTCTCCTT
  TACCCCTCCT CTCTGGTCCC ATCCCTTCTG CGGGCGAACC CCAGCATTCC TCCACGGCTC
  GGCCTGGTCA GCTTGAACCA CATTTTGTCG GCTTGCCCTG GGCAAAGAGG GAGTTTATGG
  TGGAAAGTGG GTCCAAGACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367847440	MGP_WTSI_6_31170043	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs233778012					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367847440	MGP_WTSI_6_31170043	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:31196978 () rs orientation: forward

Symbol	Name	Function Class
2210408F21Rik	RIKEN cDNA 2210408F21 gene	308 bp upstream
Cpgi17267	CpG island 17267	1252 bp distal
Cpgi17268	CpG island 17268	255 bp proximal
Lncpint	long non-protein coding RNA, Trp53 induced transcript	1569 bp upstream
Rr379139	regulatory region 379139	within coordinates
Rr627940	regulatory region 627940	844 bp distal
Rr627941	regulatory region 627941	within coordinates
Rr627942	regulatory region 627942	427 bp proximal
Rr627943	regulatory region 627943	617 bp proximal
Rr627944	regulatory region 627944	1400 bp proximal
Tssr55458	transcription start site region 55458	300 bp upstream
Tssr55459	transcription start site region 55459	357 bp upstream
Tssr55460	transcription start site region 55460	389 bp upstream
Tssr55461	transcription start site region 55461	1757 bp upstream
Tssr60179	transcription start site region 60179	1656 bp upstream
Tssr60180	transcription start site region 60180	1603 bp upstream
Tssr60181	transcription start site region 60181	1578 bp upstream
Tssr60182	transcription start site region 60182	1558 bp upstream
Tssr60183	transcription start site region 60183	1329 bp upstream
Tssr60184	transcription start site region 60184	998 bp upstream
Tssr60185	transcription start site region 60185	194 bp downstream
Tssr60186	transcription start site region 60186	244 bp downstream
Tssr60187	transcription start site region 60187	256 bp downstream