rs233789016 SNP Detail

Summary

• ID
  rs233789016
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:16862394 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTCATAAC TAACCACTCA
  CTTTTGGCTG AGAACTCTTT GTTGTGTTTT TGACAGCCAT GGTGGGTCCC CTTGTCCCCT
  TCGCCTTCCT TTTCAGACAC GTGGGTGTCA TCCAGGATTC TCTACAGTTT GTTCATGTAG
  GTGACCGCTC ACTACTGCTA ACTTGTGGCC TGTGATCATG GTAGGTTTTT TTTTTTTTTT
  T
  AGGATTTGAT AGACGCTCTA AATGAAAACC GCTTAACTTT TGGTTATCAG AAGATAACGT
  CTTCTAAAGT CTTAGATTTC TTATCCAGTC TGGTATTTTT AGTTGCCTCG AGGTAACTCC
  CAAACCTGTA CATCTTTCCT GGAGCTCTCC AACTGTTTGT TAGATGTCCC TTCTTAAAAA
  AGAAAATGTC TTCGTGGATG                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323920190	CHEV_12_16819199	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs233789016					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:16862394 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi4441	CpG island 4441			570 bp distal
E2f6	E2F transcription factor 6			Intron
				Noncoding-Transcript-Variant
Rr463370	regulatory region 463370			1406 bp distal
Rr463371	regulatory region 463371			310 bp distal
Tssr112858	transcription start site region 112858			1415 bp downstream
Tssr112859	transcription start site region 112859			1403 bp downstream
Tssr112860	transcription start site region 112860			within coordinates